Synechocystis sp. PCC 6803 GT-I: SYNGTI_2455
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Entry
SYNGTI_2455 CDS
T01777
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
syt
Synechocystis sp. PCC 6803 GT-I
Brite
KEGG Orthology (KO) [BR:
syt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syt03021
]
SYNGTI_2455 (rpoD)
Transcription machinery [BR:
syt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SYNGTI_2455 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_28
Sigma70_r4_2
LexA_DNA_bind
Stonustoxin_helical
Motif
Other DBs
NCBI-ProteinID:
BAL30202
LinkDB
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Position
complement(2729278..2730492)
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AA seq
404 aa
AA seq
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MTKPSNDEPPLTNVRDLEAMLPLEEEDLTADSQDLEYTAVAHRQQFSTDLVRLYLQDIGR
IPLLKRDEEVHIAQQVQSYLRLVEIQNRAAESDAAIDQYQTAIAVHDQLLVQLGHRPSYE
RWAKILGQTVATLKQTLKSGKKRWAELAGLTVEELENIEKQGITAKAHMIKANLRLVVSV
AKKYQNRGLELLDLIQEGTLGLERAVEKFDPTKGYRFSTYSYWWIRQGITRAIATQSRMI
RLPVHITEKLNKIKRAQRKISQEKGHTPKIDEVAEELGMTPEQVREVLTQVPRSVSLELK
VGQDKDTELMDLLETDTQSPEDELMREALQNDMQEILLDLTPREQEVIALRFGFQDGVAH
SLSEIGRILNLSRERVRQIEAKALQKLRHPRRRDRIRDYYENLG
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaccaagcaacgatgagccgccactgactaatgtacgagatttggaagctatg
ttgccgctggaggaagaggatttaacggcagactcccaggatttggaatacaccgctgta
gcccatcgtcagcaatttagtactgatttagtgcgcctttacctccaggatattggtcgc
attcccctgttgaagcgagatgaagaggtgcacatagcccagcaggtgcaaagctatctc
cgcctagtggaaatccaaaatcgggccgcagaatccgatgctgccattgaccaataccaa
acggcgatcgccgtccacgatcaacttttagtccagttgggtcatcgtccttcctatgaa
cgttgggccaaaatcctcgggcaaaccgtagcgacccttaagcaaaccctcaaaagcggt
aaaaaacgatgggcggagttggcggggttgacggtggaagaattagagaatattgaaaag
cagggcattacggccaaagcccacatgatcaaagccaatttaaggctagtggtttccgtc
gccaagaaataccaaaatcggggcttggaacttttagatctgatccaagagggcaccctg
gggttggagcgggcggtggaaaaatttgatcccaccaagggttaccgctttagcacctat
tcctactggtggattcgtcagggcatcaccagggcgatcgccacccagagtcgtatgatt
cgtttgccggtgcacatcaccgagaagttaaataaaatcaaacgagcccagcggaaaatt
tcccaagaaaagggccacactccgaaaattgacgaagtggcggaagaattaggcatgacc
ccggagcaggtgcgggaagtgctgacccaagtgccccgttccgtctccctagaactcaag
gtggggcaggataaggatacggagctaatggatttactggaaaccgacacccagtcgccg
gaggatgaattgatgcgggaggctctccagaatgacatgcaggaaattttgctagatttg
acccccagggaacaggaagtaatcgccctgcgctttggttttcaagacggcgtagcccac
tccctatctgaaattgggcgtattttgaatttatcgagggaaagggtacgacagattgaa
gctaaggctctgcaaaagttgcgccatccccgccgccgggaccgcatccgggactattac
gaaaatttgggttag
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