Picosynechococcus sp. PCC 73109: AWQ23_03250
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Entry
AWQ23_03250 CDS
T05693
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syv
Picosynechococcus sp. PCC 73109
Pathway
syv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWQ23_03250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syv03019
]
AWQ23_03250
03009 Ribosome biogenesis [BR:
syv03009
]
AWQ23_03250
Enzymes [BR:
syv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AWQ23_03250
Messenger RNA biogenesis [BR:
syv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWQ23_03250
Ribosome biogenesis [BR:
syv03009
]
Prokaryotic type
rRNA helicases
AWQ23_03250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
HEM4
Phasin
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMA08409
LinkDB
All DBs
Position
complement(679575..681038)
Genome browser
AA seq
487 aa
AA seq
DB search
MTTSFQTIGLSDARVDLLENIGFEKPTEIQSKAIPAILEGRDVVGLSQTGTGKTAAYSLP
FLEKIDLEQKTVQGLILTPTRELAVQVTQSLKEFAVDRRLWVLTVCGGQSMERQIRSLQK
GVHIVVGTPGRVIDLLERGKLSFEELRWAVLDEADEMLSMGFIDDVKKILRQSPKTRQTV
CFSATMPPAIRDLVENFLNDPINITIKQPQVTPDRIAQEVYMIPRGWSKTKALLPILEMA
NPESAIIFVRTKRTASELTNELVEAGQSADEYHGDLNQNQREKLVRRFKDGKIKMIVATD
IAARGLDVENLSHVINFDLPDNTESYIHRIGRTGRAGKTGTAIALVEPSDRRLLRQIERR
VKQSLKVSTIPSRTEVEAQRVTRLETQVREALAGERMASFLPIVKRLGDEYDPQAIAAAV
LQMMYDNNSPEWLNEDWEVPEVNTKTGLPKPTKKGGRSGRRSNYKGSGGGYKGDRSRGRR
SYSSNHS
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atgaccacttcttttcaaaccatcggcttatccgacgcccgcgttgacctgttagaaaat
attggcttcgagaagcccaccgaaattcaaagtaaagcgatccccgcaatcctcgaagga
cgggacgtggtgggactatcccaaacaggtacaggtaaaaccgccgcctactccctgcct
ttccttgaaaaaattgacctggaacaaaagactgtccagggcttgatcctcactcctacc
cgtgaactggcggtgcaggtgacccagtcccttaaggaattcgccgtggatcgtcgtctg
tgggtgctcaccgtctgcggtggtcaatccatggaacggcaaattcgcagcctacaaaaa
ggcgtccacattgttgtgggcacgccgggccgggtcatcgatcttctcgaacggggtaag
ttgtcctttgaagaactccgttgggcggtgctcgacgaagccgatgaaatgctcagtatg
ggcttcattgatgatgtgaaaaagattttgcgtcagtcccccaaaacacgccaaacggtt
tgtttctcggcgaccatgccccccgcaatccgggacctggtggaaaatttcctcaatgac
ccgatcaacatcacgatcaaacagccccaggtcacgcctgaccgcattgcccaagaggtc
tacatgattccgcgcggttggtcaaaaaccaaggcgttactacccatcttggaaatggca
aacccagagtcggcgattatctttgtgcgcacgaaacgcacagcttcggagttgaccaat
gagttggttgaagcgggccaaagtgccgatgagtaccacggcgacctcaaccaaaaccaa
cgggaaaaactggtacgtcgctttaaagacggcaaaatcaagatgatcgtcgccacggat
attgcggcgcggggtctggacgtggaaaacctcagccacgtgattaactttgatttaccg
gataatacggaaagttatatccaccggatcggtcggacgggtcgggctggtaaaacgggt
actgcgatcgccctcgtcgaacccagcgatcgccggttgttgcgtcaaattgaacggcgc
gtcaaacagtccctcaaagtttcgactattccgagccgcactgaagtagaagcccaacgg
gtgacccgcctggaaacccaagtacgggaagccttggctggggaacggatggcctccttc
ttaccgattgtgaagcgtttgggtgatgagtatgatccccaggcgatcgccgcggcggta
ttgcaaatgatgtacgacaataattcccccgaatggctcaacgaagattgggaagtaccg
gaagtcaacactaagacaggtctccccaagccgacgaaaaaaggtggccgcagcggacgt
cgttctaactacaaagggagtggcggtggctacaaaggcgatcgctcccggggacgccgt
tcctacagttccaaccattcctaa
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