Picosynechococcus sp. PCC 73109: AWQ23_09560
Help
Entry
AWQ23_09560 CDS
T05693
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
syv
Picosynechococcus sp. PCC 73109
Pathway
syv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AWQ23_09560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syv03019
]
AWQ23_09560
03400 DNA repair and recombination proteins [BR:
syv03400
]
AWQ23_09560
Enzymes [BR:
syv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AWQ23_09560
Messenger RNA biogenesis [BR:
syv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AWQ23_09560
DNA repair and recombination proteins [BR:
syv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AWQ23_09560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HTH_40
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_24
Helicase_Sgs1
MarR
HTH_IclR
GerE
HTH_5
MarR_2
HTH_20
Motif
Other DBs
NCBI-ProteinID:
AMA09543
LinkDB
All DBs
Position
complement(1984586..1986724)
Genome browser
AA seq
712 aa
AA seq
DB search
MSQFPSLEAALKHFFGYDNFRHGQKAVITAALQNRDVLALMPTGAGKSLCFQLPALLKPG
LTVVISPLIALMQDQVNALTDNGIGATFLNSTLNLDQARSRIQAIFNGNIKLLYVAPERL
FNEGFQQLLTDVDQTIGLTGFVVDEAHCVSEWGHDFRPEYRQLSRIRRRYPRTPCQAFTA
TATQRVREDIIDQLALQNPSFHCTSFNRPNLYYEVLPKDRKSYTQLLRYVRQRRGQPGII
YCSSRKKVDELADRLKQDGVKALPYHAGLADRLRADYQEQFIRDDVPVMVATVAFGMGIN
KPDVRFVVHYDLPTNLERYYQESGRAGRDGEPAHCTLFYRAGDIKRAEYFIELKEDEQEK
RIAYQQLQKMIDYAEGIDCRRTIQLSYFGEQFPGDCGGCDNCQNPRPVEDWTIEAQKFLS
CVARCRERYGMTYIIDVLRGSKKEKIIQNGHHQLSTYGIGLDHPKEAWKNLGRSLLHQGL
MTETSDGYRVLKLNARSWEILRQQKTVKIAVERRQTAQEILGISESRLDAEILFGQLRQL
RKQLADANWVAPYMIFSDATLRQMATRRPRTQADFCLISGVTSAKYQRYGEPFLAAIQEF
YASQEPPKPQVNGTQLLTLQLYQQGLSVTEIAKRRSLTAGTINEHLATLLQNGEITDLDR
LVKPAAQVEIEKAIATVGPESLTQLREHLQEKYSYDAIKLVRAKLLQTAKLA
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagttcccatccctagaagccgccctcaaacacttctttggatatgacaatttc
cgccatggccaaaaagctgtcattaccgccgccctacaaaatcgtgatgtcctggccctg
atgccaacaggagccggtaagtccctttgttttcaactgcccgccctgctgaaaccgggg
ttgacggtggtgatttctcctttgattgccctgatgcaggatcaagtcaatgccctgaca
gacaatggcattggtgcaactttcctaaacagtaccctcaacctcgaccaagcgcgatcg
cggatccaggcaatttttaacggcaatattaaactgctctacgttgccccagaacggctg
tttaacgagggctttcagcaactactcacagatgtggatcagaccattggcctgactgga
tttgtggtggatgaggcccactgtgtttcagaatggggccatgattttcgccccgaatac
cgtcaactgagtcgcatccggagacgctacccccggactccttgccaggcctttaccgcc
accgccacccagcgcgtccgggaagatattattgatcaacttgccctacagaaccccagt
tttcactgcaccagctttaatcgccccaacctttattacgaggttcttcccaaagaccgg
aaaagttatacgcaactgctgcgctatgttcgtcaacggcgtgggcaaccgggaattatc
tactgttctagccgcaaaaaagtagacgagttggccgatcgcctcaaacaagatggcgtt
aaagccttgccctaccatgcgggcttggcggatcgtttacgggcggattatcaagagcag
tttatccgggatgatgtgcctgtgatggtcgccaccgttgcctttggcatgggcatcaac
aaacccgacgtgcgctttgtggtgcattatgatttaccgaccaatttagaacgctattac
caagagtcgggtcgtgcgggtcgggacggggagcctgcccactgtactctgttctatcgg
gcaggggatattaaaagggccgaatatttcattgaactcaaggaagacgaacaggaaaaa
cgaattgcctaccagcaactgcaaaagatgatcgactatgccgaggggatcgattgtcgg
cggacgatccaactgagctattttggggaacaatttccgggggactgcggcggttgcgat
aattgccagaatcctcgccctgtcgaagattggacgattgaggcccagaaatttttatcc
tgtgttgcccgttgtcgagaacgctatggcatgacttacattatcgatgtgttgcggggt
tccaagaaagaaaaaattattcaaaacgggcaccaccaactgtctacctatggcattggc
ctcgaccaccctaaggaagcatggaaaaatttagggcgatcgctcctacatcagggcttg
atgaccgaaacaagcgatggctatcgggtcttgaagctcaacgcccgcagttgggagatt
ttgcgacaacagaaaacagtgaaaattgctgtggaacggcggcaaacggcccaggaaatt
ctggggatttctgaaagtcgcctcgatgcggaaattctttttgggcaactgcgacaactg
cggaaacaattggccgatgcaaattgggttgccccctatatgattttttccgatgcgacc
ctccggcaaatggcaactcggcgaccccgcacccaggcagatttttgtttgatttctggg
gtaacgagtgcgaaataccagcgttatggggagcctttcctcgcggcgattcaggaattt
tacgccagccaagagccaccaaaaccccaggtcaatggcacccagttactcaccctccag
ctttatcaacagggcctttcggtcacggaaattgccaagcggcgcagtctgacggcgggg
acgatcaacgagcacctggcaacattactccagaatggcgagattactgacctagaccgc
ctcgtcaaaccagccgcccaagtggaaattgaaaaggcgatcgccaccgtggggccagaa
tccttaacgcagttgcgggagcacctccaggaaaaatacagctacgatgcgattaaactg
gtgcgggctaaactgctgcaaactgcaaaattagcctag
DBGET
integrated database retrieval system
