Parasynechococcus marenigrum: SYNW0068
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Entry
SYNW0068 CDS
T00144
Name
(GenBank) conserved hypothetical protein
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
syw
Parasynechococcus marenigrum
Pathway
syw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNW0068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syw03019
]
SYNW0068
Messenger RNA biogenesis [BR:
syw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SYNW0068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B
RNase_J_C
Lactamase_B_2
RMMBL
UL11
Motif
Other DBs
NCBI-ProteinID:
CAE06583
UniProt:
Q7UA32
LinkDB
All DBs
Position
64556..66592
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AA seq
678 aa
AA seq
DB search
MANNARSGKGQEPCLRVIPLGGLHEIGKNTCVFEYGDDLMLVDAGLAFPSDGMHGVNVVL
PDTSFLRENQKRIRGMIVTHGHEDHIGGISHHLKHFNIPVIYGPRLALSMLTGKMEEAGV
SDRTTLQTVSPRDVVKVGQHFSVEFIRNTHSMADSYSLAIKTPVGTIIFTGDFKFDHTPV
DGEHFDMARLAHHGEEGVLCLFSDSTNAEVPGFCPPERSVFPNLDRHMAAAEGRVIITTF
ASSIHRVSMILELALKNGRKVGLLGRSMLNVIAKARELGYMRAPDELFVPIKQINDVPDR
ETLLLMTGSQGEPLAALSRISRGEHPQVRVKTTDTIIFSASPIPGNTISVVNTIDKLMML
GAKVVYGKGEGIHVSGHGFQEDQKLMLALTKPKFFVPVHGEHRMLVQHSKTGHAMGVPEN
NTLIIDNGDVVELTSDSIRKGDPVKAGIELLDQSRNGIVDARVLKERQQLAEDGVVTILA
AISTDGAMVAPPRVNLRGVVTTADARKMSLWTEREVTWVLENKWKQLCRNTGGKAPEVDW
MGVQREVEVGLGRRMRRELQVEPLILCLVQPAPGGTPVYKGRADAEPDDRPAPRGRRGGG
GPGRRNGHGGAGGGQGRNTPAPVRTNAAPAAAATAVVDKPVVQKAVAAPAVSQPVASKAE
PEPEMPAGRTRRRRSAAA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggcaaacaacgcacgatccgggaaggggcaggagccttgcttgcgggtgattcccctt
gggggactgcacgaaatcggcaagaacacctgcgtgttcgagtacggcgacgatctgatg
ctggtggatgccggcctggcgttccccagcgatggcatgcacggcgtgaacgtggtgctg
ccggacaccagttttctgcgggagaaccagaagcggatccgcggcatgatcgtgactcat
ggtcatgaagaccacatcggtggcatctctcaccacctcaagcacttcaacatcccggtg
atctacgggccccgtctggccctgtcgatgctcactggaaagatggaggaggccggcgtc
tccgaccgcaccacgctgcagaccgtcagtccccgcgacgtggtgaaggtgggccagcac
ttctcggtggaattcatccgcaacactcactccatggcggacagctactcgctggccatc
aaaaccccggtgggaaccatcattttcaccggcgatttcaagttcgatcacaccccggtc
gatggcgagcatttcgacatggcccgcctcgcccatcacggtgaagagggcgtgctgtgc
ctgttcagtgactccaccaatgcggaagtgccgggcttctgtccccctgagcggtcggtg
ttccccaatctcgatcgccacatggccgctgccgaaggccgggtgatcatcaccaccttc
gccagctcgatccaccgggtgtcgatgatcctggagctggccctgaagaatggccgcaag
gtgggtctgctgggtcgatcgatgctcaacgtgatcgccaaagcccgcgaactgggctac
atgcgcgcgccagatgaactgtttgtgccgatcaagcagatcaacgatgttcctgatcgt
gaaaccctgctgctgatgaccggcagccagggtgaacccttggcagctttgagtcgaatt
tccaggggtgagcaccctcaggtgcgggtgaagaccacggacacgatcatcttttcggcc
agcccgatccccggcaacaccatctccgtggtgaacacgatcgacaagctgatgatgctc
ggtgccaaggttgtctacggcaagggcgagggcattcatgtgtccggccatggcttccag
gaagaccagaagctgatgctcgccctcaccaagcccaagttcttcgtgcccgtgcacggt
gagcaccggatgctggtgcaacactccaagaccggtcacgccatgggggtgccggagaac
aacaccctgatcatcgataacggtgatgtggtggagctgacgtccgattcgatccgcaag
ggtgatccggtgaaggccggcattgagctgctggatcaatcccgcaacggcattgttgac
gcccgtgtgctcaaggagcgtcagcagctggcggaggatggcgtggtgacgatcctggcg
gcgatcagcaccgatggcgcgatggtggcgccgccgcgggtgaacctgcggggggtggtg
accaccgccgatgcccgcaagatgtcgctctggaccgagcgtgaagtcacctgggtgctg
gagaacaagtggaagcagctctgccgcaacaccggtggcaaggcaccggaagtggattgg
atgggtgtgcagcgtgaggtggaggtgggccttggccgtcgcatgcgtcgcgaattgcag
gtggagccgttgatcctttgtctggtgcagcccgctcccggtggcacgccggtgtacaag
ggtcgtgccgatgcagaacccgatgaccgtccggcgcctcgcggtcgccgtggtggtggc
ggacccggtcgccgcaatggccacggtggtgctggtggtggccagggtcgcaacacccca
gcccccgtacgtaccaatgctgctcctgcggcagctgcgacggctgtggtggacaagccc
gttgttcaaaaagctgtcgcggctccagctgtcagccagccagtggcttcgaaggctgaa
cctgaaccggagatgccggctggtcgtactcgccgccgccgttcggcggccgcctga
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