Parasynechococcus marenigrum: SYNW0411
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Entry
SYNW0411 CDS
T00144
Name
(GenBank) putative multidrug efflux ABC transporter
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
syw
Parasynechococcus marenigrum
Pathway
syw02010
ABC transporters
syw03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
SYNW0411
03070 Bacterial secretion system
SYNW0411
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
syw02000
]
SYNW0411
02044 Secretion system [BR:
syw02044
]
SYNW0411
Transporters [BR:
syw02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
SYNW0411
Secretion system [BR:
syw02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
SYNW0411
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
cNMP_binding
SMC_N
AAA_22
SbcC_Walker_B
AAA_21
AAA_29
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAE06926
UniProt:
Q7U948
LinkDB
All DBs
Position
complement(408152..411022)
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AA seq
956 aa
AA seq
DB search
MIRIRGSGPSMTASSPTSSLTSMLAGAGELRRYGTGKQLVAAGERPDGVWLITKGGVRSM
AQLPPKGDWRTVQRHGVGDLVGWLGLVQGQPLEHLRTSDLTETQFIPADQFLQLWDEQPK
LSQWCAQQMPAIEVVDLMIRLAQANPARARQLEEWRNALSLHSMAREASGHDNDDPQTVG
GGQWHWPDGTIWPARPSNEGLQQRLIWLPDPKLQALDNYFAAEIVPTDASPSTNLTPEVL
SLPRASGPRDIPMALCQALAQHFGVPFWRDNVRDEVEALLARQPQLNLFNIGQLLNNLDL
SVSLAEIPLAQLRRTPAPAVLEHDGRIAILEGVDPDGQLRLLEPEIGPVRVPLEAVLSEE
ADRLSLLLLRRRPDSKTQRFSWGWYGPFLRPHRRELIEVIATSAVVNVLALVTPLGIMRL
INARSGGSDSLDGVISIGVILIGATVVEAIASALRSLIFTGIANRVDMDTRETILDRLVR
LPQAFFDERPVGRITYYFTQLDRLRDFLISKALTTILDFSFSLLYVAVLFALNPLLTLVT
LSTLPLFIVLAIIVNPVVETQIERTIEEGVNTNSYLTEALTGIQTIKSQNAELKTRWEFQ
DRYSRFIGEDFKLKVSGETIGALAKFLGELSSISTMVVGVWLVSRNELSIGALFAFRIIG
GKVTGPMVQLVQTWQQFKIQSRNLTLAADVVDRPTEQSDLQASNIPMPLIQGSVHIDSVD
FRYSLNGPPILNNVSLDVPMGTFVGMVGGSGSGKSTLLKLLPRFYEPEQGRIQIDGLDVS
KVELYSLRRQIGVVPQDSLLFDGTIKDNLLMVKPDATSQELIRATTIACAHDFIMELPQG
YNASVGERGAGLSGGQRQRMALARAVLQNPRMLILDEATSALDARTERQVCRNLFEAFRG
RTVFFITHRLSTVRPADMIVLMDQGAVMEVGQHQELMERQGWYYALYQSQSQEGLS
NT seq
2871 nt
NT seq
+upstream
nt +downstream
nt
ttgatcagaatccgcggctctggcccgtcgatgaccgcatccagcccaacgtcgtcactc
acatcgatgctggcaggagctggagagctaaggcgctatggaacgggcaagcaattggtc
gccgccggcgagcgccccgacggcgtctggttaatcaccaagggaggtgttcgcagcatg
gcgcagctgccccccaaaggggactggcgaacggtgcaacgccatggcgtcggcgacctt
gtgggttggctcgggcttgttcagggtcaacccctcgagcacctgcgcacctccgatctc
accgaaacccagttcatccccgctgatcagtttctgcagctctgggatgagcaaccgaag
ctgagccaatggtgtgcccagcagatgcccgccatcgaagtggtggatctgatgatccgt
ctcgcccaagccaaccccgccagggcacgccaactggaggaatggcgtaacgcactaagc
ctccattccatggcacgggaagcgagtggtcacgacaacgacgatccgcagaccgtgggc
ggtggccagtggcactggcccgatggaacgatctggccagccaggccgagcaacgaaggg
ctgcagcaacggttgatctggctgccagatccgaaacttcaggccctggacaactacttt
gccgccgagattgttccgacggacgcgtcccccagcaccaatttgacaccggaggtgctc
agcctgccgcgcgccagtgggccccgcgacattcccatggccctctgccaagcactggct
cagcatttcggcgtgccgttctggcgcgacaacgtgcgtgacgaagtggaggccctgctg
gcaaggcagccccagctcaacctattcaacatcggccagctgctgaacaaccttgatcta
tcggtgtcgttggcggagattcccctcgctcagcttcggcgcacgccggctcccgccgtg
ctggagcatgacggccgcatcgccatcctcgaaggtgtggaccccgatgggcaacttcgc
ttgctggagccggagatcggcccggtccgtgtgccgctcgaggctgtgctcagcgaagag
gccgatcgcctcagcctgctgctgctgcgccgccgtccggacagcaaaacccagcgtttc
agctggggctggtatggcccgttcctgcgcccccaccgccgcgaactgattgaggtgatc
gccacctcagcggtggtgaacgtgctggccctggtgaccccccttgggatcatgcggctg
atcaacgcccggtcgggaggcagcgattccctcgatggtgtgatcagcatcggcgtgatc
ctgatcggcgccacggtggttgaggccattgcatcggccttgagaagtctgatcttcacg
ggcatcgctaaccgggtggacatggacacccgcgaaacgatcctggatcgccttgtccgc
ctgccgcaggctttcttcgatgagcggccggtcggccggatcacctactacttcacccag
ctcgatcgcctgcgtgattttctgatcagcaaggcgctcaccaccatccttgatttcagc
ttcagcctcctgtacgtggcagtgctgtttgccctgaatcctctgctgactctggtcacc
ctcagcaccctgccgctgttcatcgtgctggccatcatcgtgaatccggtcgtggagacc
cagatcgagcgcacgatcgaggagggggtcaacaccaacagctatctgaccgaagccctc
accggcatccagaccatcaagtcccagaacgccgaactgaagacgcgctgggaatttcag
gaccgttatagccgtttcatcggtgaagacttcaagctcaaggtgtcgggggaaaccatc
ggcgccctggccaagttcctgggagaactgtccagcatctccacgatggttgtcggcgtc
tggctggtgtcacgcaacgagctcagcatcggtgccctgttcgccttccggatcatcggc
ggcaaggtcaccggtccgatggtgcagttggtccagacctggcagcaattcaagattcaa
agccgcaatctgaccctggcggcggatgtggtggaccgtcccaccgagcaaagcgatctt
caggccagcaacatcccgatgcccctgattcagggcagcgttcatatcgactccgtcgac
ttccgctacagcctgaacggccctccgatcctcaacaacgtctctttggacgttccgatg
ggcacatttgttggcatggtcggcggctccggctccggcaaatccaccctgctgaagctg
ctgcctcgcttctacgaacctgaacagggtcggattcagatcgatggcctggacgtgagc
aaagttgagctttattccctgcgacgccagatcggtgtcgtcccccaggactccctgcta
tttgacggcacgatcaaggacaacctgctgatggtgaaaccggatgccaccagtcaggag
ctgatccgagccaccaccatcgcctgcgcccatgacttcatcatggagcttcctcagggt
tacaacgcatcggtgggggaacggggagccgggctctccggcggtcagcgtcaacgcatg
gccctggcccgtgccgtgctccagaacccacgcatgctgatcctcgatgaggccaccagt
gccctggatgcgcggacggaacgtcaggtgtgtcgcaacctgttcgaagccttccgcggt
cgaaccgtgttcttcatcacccaccgcctctccacggtgcggccggcggacatgatcgtg
ctgatggatcagggcgccgtgatggaggtgggccagcaccaggagctgatggagcgacag
ggttggtactacgccctgtatcagagccagagccaggaaggtctcagctga
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