Parasynechococcus marenigrum: SYNW0614
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Entry
SYNW0614 CDS
T00144
Symbol
rpoC1
Name
(GenBank) RNA polymerase gamma subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syw
Parasynechococcus marenigrum
Pathway
syw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYNW0614 (rpoC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syw03021
]
SYNW0614 (rpoC1)
03400 DNA repair and recombination proteins [BR:
syw03400
]
SYNW0614 (rpoC1)
Enzymes [BR:
syw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYNW0614 (rpoC1)
Transcription machinery [BR:
syw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYNW0614 (rpoC1)
DNA repair and recombination proteins [BR:
syw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYNW0614 (rpoC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
DUF333
Fas_alpha_ACP
Motif
Other DBs
NCBI-ProteinID:
CAE07129
UniProt:
Q7U8K3
LinkDB
All DBs
Position
595766..597670
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AA seq
634 aa
AA seq
DB search
MTNSNLRTENHFDYVKITLASPERVMEWGQRTLPNGQVVGEVTKPETINYRTLKPEMDGL
FCEKIFGPSKDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVSHVWY
LKGIPSYVAILLDMPLRDVEQIVYFNCYVVLDPGDHKELKYKQLLTEDEWLEIEDEIYAE
ESEIENEPVVGIGAEALKQLLEDLNLEEVAEQLREEINGSKGQKRAKLIKRLRVIDNFVA
TSARPEWMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPE
IIVRNEKRMLQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDY
SGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQNIVNNIKAAKKLIQRADDEVM
QVLQEVIDGHPIMLNRAPTLHRLGIQAFEPKLVDGRAIQLHPLVCPAFNADFDGDQMAVH
VPLAIEAQTEARMLMLASNNILSPATGEPIVTPSQDMVLGSYYLTALQPGAEQPEFGDRS
RTYSSLEDVIHAFEDTRIGLHDWVWVRFNGEVEDNDELDEPIKSETLSDGTRIEQWTYRR
DRFDEDGALISRYILTTTGRVVMNHTIIGAVAAA
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atgaccaacagcaacctccgcaccgagaaccacttcgactatgtcaagatcacccttgca
tcacccgaacgggtgatggagtggggccaacgcaccctgcccaatggtcaggtggttggt
gaggtcaccaaaccggagaccatcaactaccggaccttgaagcccgagatggacgggctg
ttctgcgaaaagatctttggtccctccaaggactgggaatgccactgcggcaagtacaag
cgcgtgcgtcaccgcggcattgtctgtgagcgctgtggtgtggaggtcaccgagagccgg
gtgcgtcgtcaccggatgggtttcatcaagctggcagcaccggtctctcacgtttggtac
ctgaagggtattcccagctatgtggccatccttttggacatgcccctgcgggatgtggag
cagatcgtttacttcaactgctatgtggtgctggatcccggcgaccacaaagagctgaag
tacaaacagctgctcaccgaggacgagtggctggagatcgaagacgagatctatgccgag
gaatcggagatcgagaacgagcctgtggtgggcatcggtgctgaggcgctcaagcaactg
ctcgaagacctcaatctggaggaagtggctgagcagctgcgtgaggagatcaacggcagc
aagggccagaagcgggccaagctgatcaagcgtctgcgagtcatcgataacttcgtggcc
accagtgctcgtcctgagtggatggtgctggatgtgattccggtgatcccgccggatctc
cgcccgatggtgcagctggatggtggtcgtttcgccaccagtgatctcaacgatctctac
cggcgggtgatcaaccgcaacaaccgtctggccaggcttcaggaaatcctggcccccgaa
attatcgtccgcaacgagaagcggatgctgcaggaggccgtcgacgccttgatcgacaac
ggtcgtcgcggtcgcaccgtcgtcggcgccaacaaccgtccgctgaaatcacttagcgac
atcatcgagggcaaacagggtcgcttccgtcagaacctgctgggcaaacgggtcgactac
tccggtcgttccgtgatcgtggtgggtccaaagctgaaaatgcatcagtgcggcctgccg
aaggagatggcgatcgagctgttccagcccttcgtgatccatcgcctgatccgacagaac
atcgtcaacaacatcaaggcggccaagaagctgattcagcgggccgacgacgaggtgatg
caggtgctgcaggaggtgatcgacggtcatccgatcatgttgaaccgcgccccgactctg
caccgtctcggcatccaggccttcgaaccgaagctcgttgatggtcgcgccattcagcta
cacccgttggtctgccccgccttcaacgccgacttcgacggtgaccagatggccgtgcac
gtgcccctggcgatcgaagctcagaccgaggcccgcatgttgatgctggccagcaacaac
atcctgtcgccggccaccggtgagccgatcgtgaccccgtcccaggacatggtgctcggt
tcctactacctcacggctctgcagcctggggctgaacagcctgaattcggtgatcgcagc
cgcacctactcaagcctcgaggatgtgatccatgccttcgaagacacccgcatcggtctg
cacgactgggtctgggtgcgtttcaacggcgaagtcgaagacaacgatgagctggacgag
cccatcaagagcgagaccctcagcgatggcacccgtattgagcagtggacctaccgccgc
gatcgttttgacgaagacggtgccctgatcagccgttacatccttaccacgaccggccgg
gtagtgatgaatcacacgatcatcggcgcggtggccgccgcctga
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