Parasynechococcus marenigrum: SYNW0920
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Entry
SYNW0920 CDS
T00144
Name
(GenBank) probable ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
syw
Parasynechococcus marenigrum
Pathway
syw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNW0920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syw03019
]
SYNW0920
03009 Ribosome biogenesis [BR:
syw03009
]
SYNW0920
Enzymes [BR:
syw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SYNW0920
Messenger RNA biogenesis [BR:
syw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SYNW0920
Ribosome biogenesis [BR:
syw03009
]
Prokaryotic type
rRNA helicases
SYNW0920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
AAA_30
B12-binding
DEDD_Tnp_IS110
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAE07435
UniProt:
Q7U7R1
LinkDB
All DBs
Position
880771..882567
Genome browser
AA seq
598 aa
AA seq
DB search
MNDQQLGETPCAVDLSASSLPEQATSEQGSADVFTTTIDAQQPESGFDGFGFSEALLKTL
ADKGYSEPSPIQKAAFPELMLGRDLVGQAQTGTGKTAAFALPLLERLASGQKTPQALVLA
PTRELAMQVADSFKAYSAGHPHLKVLAVYGGTDFRSQINTLRRGVDVVVGTPGRVMDHMR
QGTLDTSGLRSLVLDEADEMLRMGFIDDVEWILEQLPQERQVVLFSATMPPEIRRLSKRY
LKDPAEVTIRTKDQEGKRIRQRSITVPMPHKLEALQRVLDACGGEGVIIFARTKAITLTV
AETLEAGGHQVAVLNGDVPQNQRERTVERLRSGSVDILVATDVAARGLDVDRIGLVINYD
MPFDSEAYVHRIGRTGRAGRTGEAVLFVTPRERRFINNLERATGQPIEAMEVPGNSAINQ
GRLDRLHKRLSEAAHNERSYEEEAALLKELLQRIGTELELSPEQLAYAALSMAIGPDPLL
RQKGDDEWIHNNQRRDRDRDRDRGGERRERRSDRPARAPEENMQRYRVEVGHRDRVKPGN
LVGAIAGETGLQGRAIGRIQIFDNHSFVDLPKGMPEDVFNSLRRLRVMNRELQITQAS
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgaatgaccaacagctcggggagaccccgtgcgccgtcgatctgtccgcatcttcgctg
cctgagcaggccacttcagagcagggttctgcagacgtcttcaccacaacgatcgacgcc
cagcaaccggaatcgggtttcgatggtttcggattcagtgaggcattgctgaagacgctg
gcggataaggggtacagcgagccttcaccgattcagaaggcggccttccctgaattgatg
ctggggcgtgacctggtgggccaggcccagaccggtaccggaaaaacggcggccttcgcg
ttgccattgctcgaacggctcgccagtggccagaaaactccgcaggccctcgtgctggca
cccacccgcgaactggccatgcaggtggctgattcgttcaaggcctattccgctgggcat
ccgcatctgaaggtgctggcggtttacgggggcaccgacttccgttctcagatcaacacc
ctgcgccgtggcgtggacgttgtggtggggacaccgggccgggtgatggatcacatgcgg
cagggcaccttggacacctccggcctacgcagcctggtgctggatgaggccgacgaaatg
ctgcggatgggcttcatcgacgatgtcgagtggatcctggagcaactgccgcaggaacgg
caggtggtgctgttctccgcgaccatgccaccggagatccgtcgcctgtcgaagcgctat
ctgaaggatccagccgaggtcacgatccgcaccaaggatcaggaaggcaaacggattcgc
cagcgttcgatcaccgtgccgatgccccacaagctggaggctctgcagcgggtgctcgat
gcctgcggtggtgaaggagtcattatttttgcccgcaccaaggccatcaccctcaccgtg
gccgagacgcttgaggcgggcgggcatcaggtggccgtgctcaacggtgatgtgccgcag
aaccagcgggagcggacggtggaacggctgcgcagtggttccgtcgacatccttgtggcc
accgatgtggccgctcggggcctggatgttgatcgcatcgggttggtgatcaactacgac
atgccgttcgacagcgaggcctacgtccaccgcatcggtcgtaccggccgggccggtcgc
acgggggaggccgtgctgtttgtcaccccgcgcgagcgtcgcttcatcaacaaccttgag
cgggcaacaggccagccgatcgaggcgatggaggtgccaggcaactccgcgattaaccag
ggtcgactcgatcgtttgcacaaacgcctcagcgaagcagcccacaacgagcggtcctat
gaggaagaagcggcgctgctgaaagagctgttgcaacgcatcggcacggaactggagctc
agccctgagcaactggcctacgccgccctcagcatggccatcggcccagaccctttgctg
cgccagaagggcgacgacgagtggattcacaacaaccagcgccgcgatcgtgatcgtgac
cgtgatcggggcggcgaacggagagagcgccgctccgatcgtccggcccgtgccccggag
gagaacatgcagcgctaccgcgtcgaggttgggcaccgtgatcgggtcaagcccggaaac
cttgtcggggccatcgccggagaaaccggtctgcagggccgtgcgatcggccggattcag
attttcgacaaccacagctttgtggatctgcctaaaggcatgccggaggatgtctttaac
agcttgcggcggcttcgggtgatgaaccgggagctacagatcactcaggcgtcgtga
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