Parasynechococcus marenigrum: SYNW1032
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Entry
SYNW1032 CDS
T00144
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
syw
Parasynechococcus marenigrum
Pathway
syw03030
DNA replication
syw03430
Mismatch repair
syw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SYNW1032 (dnaE)
03430 Mismatch repair
SYNW1032 (dnaE)
03440 Homologous recombination
SYNW1032 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syw03032
]
SYNW1032 (dnaE)
03400 DNA repair and recombination proteins [BR:
syw03400
]
SYNW1032 (dnaE)
Enzymes [BR:
syw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SYNW1032 (dnaE)
DNA replication proteins [BR:
syw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SYNW1032 (dnaE)
DNA repair and recombination proteins [BR:
syw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SYNW1032 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
CAE07547
UniProt:
Q7U7F3
LinkDB
All DBs
Position
1028073..1031591
Genome browser
AA seq
1172 aa
AA seq
DB search
MAFVPLHNHSDYSLLDGASQLPAMVERAKELGMPAIALTDHGVMYGAIELLKLCKGSDLK
PIIGNEMYVINGSIDDPQPKKEKRYHLVVLAKNAVGYRNLVKLTSISHLRGMRGRGIFSR
ACIDKHLLKTYSEGLIISTACLGGELPQAILRGRPDVARNVARWYQEVFGEDFYLEIQDH
GSPEDRIVNVELVRIAQELGIQLVATNDAHYLSKQDVEAHDALLCVLTGKLISDEKRLRY
TGTEYIKTEEEMNRLFVDHLEPDVVRQAIANTVAVAEKVEDYDILGHYQMPRFPIPEGHT
AVTYLREVTEQGLRERLELSSDASIPENYAERMAHELKIMEQMGFPTYFLVVWDYIRFAR
EQKIPVGPGRGSAAGSLVAYALGITNIDPVTNGLLFERFLNPERKSMPDIDTDFCIERRS
EVIDYVTERYGDDKVAQIITFNRMTSKAVLKDVARVLDIPYGDADRLAKLIPVVRGKPAK
LKAMIGEESPTPEFREKYESDPVVKRWVDMAMRIEGTNKTFGVHAAGVVIAADPLDELVP
LQRNNDGQVITQYFMEDVESMGLLKMDFLGLKNLTMIDKTLELVEVSSGTRLDPDKLPPE
DADTFALLARGDLEGIFQLESSGMRQIVRDLKPSSLEDISSILALYRPGPLDAGLIPKFI
NRKHGREAIDFAHTILEPILSETYGIMVYQEQIMRIAQDLAGYSLGQADLLRRAMGKKKV
AEMQKHRGIFVKGAAERGVDEAVSDELFDQMVLFAEYCFNKSHSTAYGAVTYQTAYLKAH
YPVAYMAALLTVNAGAADKVQRYIANCNAMGIEVMPPDVNASRTDFTPNGDRILFGLSAV
RNLGDGAIRQLIRSRDSDGPFRSLPDLCDRIPSSVLNRRGLESLIHCGALDSMDPAANRA
QLMADLDLLLDWASSRAKDRDSGQGNLFDLMAAPNDEDGASDLSLAPKAAPVADYGPAEK
LKLEKELLGFYLSDHPLKQLTPSARLLAPIGLGALEEQPDKAKVSAVTMITELRQVTTRK
GDGMAILQLEDLSGSCEAVVFPKSYARLADHLMTEARLLVWAGVDRRDDRVQLIIDDCRA
IDDLAVLLVELSSQQASDIAIQHKLRECLTQYRPEREELGVKVPVIAAVRDGHSVRYVRL
GSQFCVKDAEAALQALKTQAFTARHSEPMVLG
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atggcattcgttccgctccacaaccacagcgattacagcctgctggatggcgcatcgcag
cttccggccatggtggagcgcgccaaggaactgggcatgccagccattgccctgacggat
cacggggtgatgtatggcgccattgagctgctgaaactctgcaagggctccgatctcaag
ccgatcatcggcaatgagatgtatgtgatcaatggatccatcgatgatcctcagccgaag
aaagagaagcgctaccacctggttgttctggccaagaatgccgtcggctaccgcaacctg
gtgaagctgacgagcatcagccatctgcggggaatgcgggggcgggggatattttcgcgc
gcctgcattgataagcaccttctcaaaacctatagcgaaggtttgatcatctccaccgcc
tgtctcggtggagaattgccgcaggcaatcctgcgggggcggccggatgttgcccgcaat
gtggcccgttggtatcaggaggttttcggggaagatttctatcttgaaattcaggatcat
ggctctcctgaagacaggattgtcaacgttgaacttgtgcgcatcgcccaagaactcggc
atccaattggtggccaccaacgatgctcattacctgagcaagcaggatgtggaggcgcac
gatgccttgctttgcgtgctcacgggcaaactcatcagcgacgagaaacgacttcgttac
accggcacggaatatatcaagaccgaagaggagatgaaccgactcttcgtggatcatcta
gagccggatgttgtgcgtcaagccatcgccaacaccgtggctgttgccgagaaagttgag
gactacgacatcctcggccactaccagatgcctcgctttcccattcctgagggacacact
gcagtgacctacctgcgagaggtcacagagcaaggtttgcgggagcgactcgagctgtcc
tccgatgcatccattccggagaactacgccgagcggatggcccatgagctcaaaatcatg
gaacagatggggttccccacctacttccttgtggtgtgggattacatccgtttcgcgcgt
gaacaaaagattccagtggggcccggccgaggttcggcggcgggatccctcgtggcttat
gcccttggcatcaccaatattgatccagtgaccaacggattgttgtttgaacgtttcctc
aatccggaacgcaaatcgatgcctgatattgacaccgacttctgcattgaacgacgtagt
gaagtgattgattacgtcactgaacgctatggcgacgacaaagtggcccagatcatcact
ttcaacaggatgacatccaaggctgtgctgaaggatgtggcccgggtcttggacattccc
tacggcgatgccgaccggctggcgaaattgattcctgtggtccgtggaaagcccgccaaa
ttgaaggccatgattggtgaggagtcaccaacgccggaattccgcgagaaatacgaatcc
gacccagttgtgaagcgctgggtagatatggccatgcgcatcgagggaaccaacaaaacc
ttcggtgtgcatgcagcgggcgtggtgattgccgctgatccattggatgaattggtgcca
ttgcagcgcaacaacgatggtcaggtgattacgcagtacttcatggaagatgtggaatcc
atgggtctgttgaagatggactttctgggcctcaagaatctcacgatgattgataaaacc
ctggaattggtggaagtcagcagcggaacgcggctggatcccgacaagcttccgcctgag
gatgccgacaccttcgccttgctggcccgtggggatctggaaggcatcttccagctggag
tccagtggcatgcgtcagatcgtccgtgatctgaagccgtcctccctggaggacatttca
tcaatcctggcgctgtatcgacccgggcctttggatgccggcctgattcccaaattcatc
aaccgcaaacatggccgcgaagccattgacttcgcccacacgattttggagccgattctg
agtgaaacctacggaatcatggtctaccaggagcagatcatgcgcattgcccaggatctc
gccggttattccctcggccaggcagatctgcttcggcgggcgatgggcaagaaaaaagtg
gcggagatgcagaagcatcgcggcatctttgtgaagggtgctgccgagcggggtgtggat
gaggcggtctcggatgaactgtttgatcagatggtgctgttcgccgaatactgcttcaac
aagagccattccacggcctatggcgccgtcacctatcaaacggcctatctgaaagcgcat
taccccgtcgcctacatggccgccctgctcacggtgaatgccggtgcagccgacaaggtg
cagcggtacatcgccaattgcaatgccatgggcatcgaggtgatgccaccggacgtcaat
gcctcccgcacagatttcactccgaacggcgatcgcatcctcttcggtttatccgctgtt
cgaaaccttggcgatggggccatccgtcagttgattcgttcacgggatagcgatggcccg
ttccggtcgctgccggatctttgtgatcggatcccttcctcggtgctcaaccgccgcgga
ctggaatctctgattcactgcggtgccttggattccatggatccagccgctaaccgagcc
cagttgatggctgatctcgatcttctcctcgactgggcctcgtcgagagccaaggaccgt
gacagtggccaaggcaacctgttcgacctgatggcagctccgaacgatgaggacggtgcc
tctgatctcagtctcgctcccaaggccgctccggtggcggattacggcccagccgagaag
ctcaagctggagaaggagctgcttggtttctatctgtccgaccatccgctcaagcaactc
acacccagtgctcgactcctcgcacccatcggcctgggggcgcttgaagagcaaccggac
aaggccaaggtcagtgccgtcacgatgatcactgagttgcgtcaggtcaccacccgcaag
ggggacggaatggcgatcctccagctggaggatctctccggcagttgcgaagccgtggtg
tttcccaagagttatgcccgactcgcggaccatctgatgacagaggcgcgtcttctcgtc
tgggcgggcgtcgatcgtcgggatgatcgcgttcagttgatcattgatgactgcagggcc
attgacgacctagctgttctccttgttgaactctcctcccagcaggccagcgacatcgcc
atccaacacaaattgagggagtgcttgacgcaatatcgacctgagcgtgaggagcttggc
gtcaaagtgcccgttatcgctgcggttcgcgatggtcattcagttcgctatgtccgactg
ggttctcagttctgcgtcaaggacgcggaagctgcactgcaagccctgaagacacaggcc
ttcacggcccgtcactcagagcccatggttctgggttga
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