Parasynechococcus marenigrum: SYNW1224
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Entry
SYNW1224 CDS
T00144
Name
(GenBank) probable ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
syw
Parasynechococcus marenigrum
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syw03016
]
SYNW1224
Enzymes [BR:
syw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SYNW1224
Transfer RNA biogenesis [BR:
syw03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SYNW1224
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CAE07739
UniProt:
Q7U6W2
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All DBs
Position
complement(1214922..1216970)
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AA seq
682 aa
AA seq
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MIASALASDFQTDAIVGVLLKGQPLIGRLLSCKGSKAVLAFGGQRRDQEIPLRELVPCGE
LSDSVRRSVLPTPDQVQSIVLSPRVSAEAWWLLVSDVTDDTLPCISLSDLTDLLVGRPDL
IALAAVWSWLNGPQIWFRLRRDRTLQARPLNEIRQQRLKQRREHLQREHDLRQLALLQES
APLTEQRRELLDPTWSDRLDQLLELVHGPEADLGEMPGLGLLQLLGLPPDRKALKTWLVA
RELLDPHQPSALRGSAWSSQLPEANAEIIDELLARAADSCSGDDTRVDLTAQRVYTLDDS
STKEIDDGLALEPGDGGPWIWIHIADPARLIEPDSPLDREARRRATSLYLANGVLPMLPL
KLATEIFSLRAGQRCPALSVGVLLDDEGAVVASSCQRSWVQPRYRLTYEDGDELIELVPP
GDEDLAQLSALLKRRFNWRQRRGAINFERQEGRFRRGAAGPELQVIDPSPARVMVSEAML
LMGAAVAEIGRREGMALPYRSQPPAELPSAQELAEIPEGPARDAAVKRCLSRGLQGTSPM
PHFSLGLEAYVQATSPIRRYADLLAHRQLIAWIEQRSVMSEPLLREQLDSLEDPLRQSIQ
ISREDQRHWQQVWLEQHRDQQWSVQFLRWLRPQDRLALVHVPDLAMDLVGYADGEDPAPG
QLLTMTVLHVDPDRAELKLRFQ
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
ctgatcgcttcagccttggcaagtgatttccagaccgacgccatcgtcggcgttctgctc
aagggtcagcccctcatcggccgcctgttgtcctgcaagggcagcaaggcggtcttggca
tttggtggacaacgacgggatcaggagattccactgcgggagcttgttccctgcggagag
ctgagcgactcggttcgccgttctgtgctgcccacaccggaccaggtgcagtccattgtt
ctgtcaccaagggtcagtgcagaggcctggtggctgctggtgagtgatgtcacggatgac
accctcccttgcatctccctgagcgatctgaccgatctgctggtgggacggcctgatctc
attgcgctggcggccgtctggagctggctgaatggtcctcagatctggtttcgactgcga
cgggatcggaccctgcaggcgcgccccttgaatgagattcgccaacagcggctcaaacag
cgacgggagcatttgcaacgggagcatgaccttcgccagttggccctgttgcaggagtca
gctccactgaccgagcaacgacgagagctgctggatccgacctggtccgaccgccttgat
cagctgctggagctggtccacgggccggaagcggacctgggcgaaatgcctggactgggc
ttactccagctgctggggctgccccccgatcgcaaggctctgaagacctggcttgtggca
cgtgagctgttggatcctcaccaacccagcgcgttgcgcggcagtgcgtggtcgagccaa
ctaccagaggcgaacgccgaaatcattgacgagttgctggccagggcagctgacagctgt
tccggtgatgacacccgcgtggatctgacggcacaacgggtttacaccctggatgactcc
agcaccaaggaaatcgacgacggcctggcactggaacctggcgatggtggaccgtggatc
tggatccacatcgctgatccggcacgcctgattgaaccggacagccccctggaccgtgag
gcccgtcgacgggccaccagcctgtatctggcgaatggcgtgctgccgatgctgccgctg
aagctcgccacagagatcttcagtctccgtgcagggcagcgttgccctgctctcagtgtc
ggtgtgctcctggatgacgagggtgcggtcgtggccagcagctgtcagcgctcctgggtg
caaccccgttatcggctcacctacgaggatggcgatgaactgatcgaactggtccccccc
ggggatgaggacctcgcccagctgtccgccctgctcaaacgtcgcttcaactggcgtcag
cgtcggggagccatcaacttcgagcgccaggaaggacggttccgccgcggcgcagccggt
cctgagcttcaggtgatcgatccctctccagctcgagtgatggtcagtgaggcgatgttg
ctgatgggtgccgctgtggcggagatcggtcgcagggaagggatggccctgccctatcgc
agtcagccaccagcggagctccccagtgcgcaggagttggcggagataccggagggccct
gcccgtgatgcagcggtgaaacgctgtctcagtcgaggtctgcagggcacatcaccgatg
ccccacttcagtctcggattggaggcctacgtgcaggccacctcacccatccgtcgttac
gccgacctgttggcccatcgccagttgatcgcctggatcgagcagaggtccgtgatgtcg
gagcccctgctgcgggagcagctggattcgttggaggatcccctgcggcagtcgatccag
atcagtcgtgaggaccagcgccactggcaacaggtgtggctggaacagcatcgcgaccaa
cagtggtcagtgcagttcctgcgttggctacgccctcaggatcgcctggcgctggttcac
gtgccggatctggcgatggatctggtgggttatgccgacggggaggatccagcgccaggc
cagctgctgacgatgacggtgcttcatgtcgatccggacagagccgagctcaagctgcgc
tttcaatga
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