Parasynechococcus marenigrum: SYNW1232
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Entry
SYNW1232 CDS
T00144
Name
(GenBank) Possible type 3 alternative RNA polymerase sigma factor
KO
K03090
RNA polymerase sigma-B factor
Organism
syw
Parasynechococcus marenigrum
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syw03021
]
SYNW1232
Transcription machinery [BR:
syw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SYNW1232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
HTH_50
HTH_38
HTH_AsnC-type
PH_PKH3_C
KORA
Motif
Other DBs
NCBI-ProteinID:
CAE07747
UniProt:
Q7U6V4
LinkDB
All DBs
Position
complement(1225446..1226123)
Genome browser
AA seq
225 aa
AA seq
DB search
MALTTDGMQCPDIHLFMSNTTVQRRNQQVERHLYLAERLARSFSQRTGLDHDDLYQVAVL
GLIKATKAYRSETNVPFEAFARVHARGAILHYLRDSVALVRLPRRIEEEAQRLSQIHQPK
NSREEWVQALYRSKNRWLPCPEEQQAQSNSGITMMVNAERRDAIQLAFSQLGDAEKHAVK
AVVIDGRSLRNVGTSLGVSAMTVQRRVKKGLKQLKLRLGSLQTAH
NT seq
678 nt
NT seq
+upstream
nt +downstream
nt
atggccttaacaacagacgggatgcaatgtcccgacattcatttgttcatgtccaacacc
acagttcaacggcgcaaccaacaagttgagcgccacctttacctcgccgaacggcttgcc
aggagcttttctcaacgaacaggtctcgaccatgacgacctctatcaggtggcggtcctt
ggtctgatcaaggcgaccaaggcatatagaagcgaaacgaacgttcctttcgaggcattt
gccagagtccacgcccgtggagcgatccttcattacctacgcgacagtgtcgccctcgtc
cgcctgccaagacggatcgaggaggaagcacaacgactcagtcaaatccatcagccaaag
aacagccgcgaggagtgggtgcaggctctgtatcggagcaaaaatcgctggctgccctgt
ccagaggaacagcaggcccaatcgaacagcggaattacgatgatggtgaatgcggaacga
cgtgacgccattcaattggccttttcccagctcggagatgctgaaaagcacgccgtcaag
gcggtggtcattgatggccgaagcctgcgcaacgtcggcacaagcctcggagtatctgcc
atgaccgttcaacgacgggtgaagaaaggcctcaaacagctgaagctcaggctgggctca
cttcaaacagctcactaa
DBGET
integrated database retrieval system
