Parasynechococcus marenigrum: SYNW1872
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Entry
SYNW1872 CDS
T00144
Symbol
topA
Name
(GenBank) Prokaryotic DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
syw
Parasynechococcus marenigrum
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
syw03032
]
SYNW1872 (topA)
03400 DNA repair and recombination proteins [BR:
syw03400
]
SYNW1872 (topA)
Enzymes [BR:
syw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
SYNW1872 (topA)
DNA replication proteins [BR:
syw03032
]
Prokaryotic type
DNA Topoisomerases
SYNW1872 (topA)
DNA repair and recombination proteins [BR:
syw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
SYNW1872 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
HC2
MAJIN
LIM_FHL2-3_N
Motif
Other DBs
NCBI-ProteinID:
CAE08387
UniProt:
Q7U539
LinkDB
All DBs
Position
complement(1785158..1787860)
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AA seq
900 aa
AA seq
DB search
MAHTLVIVESPTKARTIRGFLPKGFKVEASMGHVRDLPNNASEIPASAKGQKWANLGVNT
EADFDPLYVVPKDKKKVVRELKDALKGADQLLLATDEDREGESISWHLLQLLAPKVPVKR
MVFHEITKEAIGKALDQTRDLDMELVHAQETRRILDRLVGYSLSPLLWKKVAWGLSAGRV
QSVAVRLLVQRERARRAFCSGSYWDLKAQLEHSGSGFEAKLTHLVGRRIATGNDFDESTG
GLKAGSEVRLLTEKEARALAETVQAATWSVDAVEEKPTVRKPVPPFTTSTLQQEANRKLR
LSARETMRCAQGLYERGFITYMRTDSVHLSDQAISASRSCVESLYGKEYLSKGPRQFSNK
ARNAQEAHEAIRPSGESFRTPGDTGLEGRDLAVYDLIWKRTVASQMAEARLTMLSIDLSS
GEASFRASGKRIDFPGFFRAYVEGSDDPDAALEGQELLLPALAVGDAPAPKQVEPLGHQT
QPPARFSEASLVKMLEKEGIGRPSTYASIIGTIVDRGYSTLQGNALTPSFTAFAVTALLE
EHFPDLVDTSFTARMENTLDEISHGKVEWLPYLEGFFKGDQGLETQVQQREGDIDPGASR
TVDLEGLSCVVRIGRFGAYLESKRVGDDGEEELIKATLPREITPADLDADQAELILKQKA
DGPESIGEDPETGDLVYLLFGQYGPYVQRGQVSDENPKPKRASLPKGQKPEDLTLDDALG
LLRLPRLLGEHPDGGRVQAGLGRFGPYVVWDKGKSEKDYRSLKGDDDVLAVGLSRALELL
AMPKRGRGGRTALKDLGKPEGSEETIQVYDGPYGLYVKQGKVNASLPEGKGADDVTLEEA
VELLAAKASAKKSSRKTTAAKKAPAKKAAAKKTAAKKPPATTKSGRLRASAVRVIKPADS
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
gtggcgcacaccctcgtcattgttgaaagccccacgaaggcccgcaccattcgcggcttc
cttccgaaggggttcaaggtcgaggcgtccatgggccatgtgcgggatcttcccaacaac
gccagcgagatccctgcgtccgccaagggtcagaaatgggccaaccttggcgtcaatacc
gaagccgacttcgatcccctttacgtggtgccgaaggacaagaagaaggtggtgcgcgag
ctaaaagatgcgttgaagggcgcggatcagctgctgctggccactgacgaagaccgcgag
ggggaaagcatcagctggcacctgctgcagctgttggcgccgaaggttccggtgaagcgg
atggtcttccacgagatcaccaaggaagccatcggcaaggcgctggatcagacccgtgat
ctcgacatggagctggtgcatgcccaggagacgcgccggatcctggatcgtctggtgggg
tacagcctctctcccctgctctggaaaaaggtggcatgggggctttccgctggccgggtg
caatcggtcgccgttcgcctcctggtgcagcgggaacgggcccggcgggccttttgcagc
ggcagttactgggatctcaaggcccagctcgagcattctggcagtggtttcgaggccaaa
ttgacccatctggttggccgacgtatcgccaccggcaacgatttcgacgaaagcaccggt
ggcctcaaggccggcagcgaggtgcggctgctgacggaaaaggaggcccgcgctctggcg
gaaacggttcaggccgcgacctggtcggtggatgctgttgaggagaagcccacggtgcgg
aagccggtgccgccgttcaccaccagcacccttcagcaggaggcgaatcgcaaactacgc
ctctcagcgagggagacgatgcgctgcgcccagggcctctacgagcgaggtttcatcact
tacatgcgaaccgactcggttcatctttcggatcaggcgatcagcgcgtcccgcagctgt
gtggagagcctctacggcaaggagtatctgagcaaggggccgcggcaattcagcaacaag
gcacgcaatgcccaggaggcccacgaggcgattcgcccctccggcgagagcttccgcaca
cctggcgataccgggcttgaaggccgtgacctggcggtgtacgacctcatctggaaacgc
accgttgccagtcagatggcggaagcccggctgacgatgctgtcgatcgatctcagctct
ggagaggcaagtttccgagccagtggcaagcgaatcgattttccgggcttcttccgtgcc
tacgtcgagggcagcgacgaccctgatgcagccctggagggccaggagctgcttctgccc
gcactggcggtgggtgatgcccctgcccccaagcaggtggaacctttgggccaccagacc
cagcccccagcccgtttcagcgaagcctctctggtcaagatgctggagaaggagggcatc
ggacgaccctccacctacgcctcgatcatcggcacgattgttgatcgcggctattccacg
ctgcagggcaatgccctgacccccagcttcacagcctttgctgtgaccgccctgctggaa
gaacattttccggatctggttgatacgagcttcacggctcggatggagaacactcttgat
gagatctcccacggcaaggtcgaatggttgccgtatttggaagggtttttcaaaggtgat
caggggctggaaacccaggtgcagcaacgggaaggggacatcgatcccggagcctcccga
accgtcgacctcgagggcctgtcctgcgtggtgcgcatcgggcgattcggtgcctacttg
gagtccaaacgggtcggcgatgacggcgaggaggagctgatcaaagcgacgctcccccgg
gagatcacaccggcggatctggatgcggaccaggcggaactgatcctgaagcagaaggca
gatggcccggaatccatcggcgaggacccagagacgggcgacttggtgtacctcctgttc
ggtcagtacgggccctatgtgcagcgcggacaggtcagtgatgagaatccaaagcccaaa
cgggcctcactgcccaagggccagaaacctgaggatctgaccttggatgatgctctcggc
ctgctccgactcccccgcttgttgggggaacatcccgatggcgggcgggttcaggctggt
ctcggacgtttcgggccctatgtggtttgggataagggcaagagtgagaaggactaccgc
tccctcaagggtgacgacgatgtgctggcggttggcctcagtcgcgccttagagctgctg
gccatgccgaaacggggccgcggcggccggacggcgctgaaggatctcggcaaacccgag
ggcagcgaggagacgattcaggtctacgacggtccctatggcctctacgtcaagcagggc
aaggtcaatgcctccctgcctgaaggcaaaggggcggacgatgtcacgctggaggaggcc
gtggaactgctggcggcgaaggcttctgccaagaagagcagccgcaagaccacggcggcc
aaaaaagctccggccaagaaagccgctgcgaaaaaaaccgccgccaagaaacctcctgcc
accaccaagagcggacggctgcgggctagtgccgtgcgggtgatcaaacccgccgacagc
tga
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