Parasynechococcus marenigrum: SYNW1897
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Entry
SYNW1897 CDS
T00144
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
syw
Parasynechococcus marenigrum
Pathway
syw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SYNW1897 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syw03019
]
SYNW1897 (pnp)
03016 Transfer RNA biogenesis [BR:
syw03016
]
SYNW1897 (pnp)
Enzymes [BR:
syw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SYNW1897 (pnp)
Messenger RNA biogenesis [BR:
syw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SYNW1897 (pnp)
Transfer RNA biogenesis [BR:
syw03016
]
Prokaryotic type
tRNA degradation factors
SYNW1897 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_RRP5
KH_KhpA-B
PCB_OB
KH_2
Motif
Other DBs
NCBI-ProteinID:
CAE08412
UniProt:
Q7U515
LinkDB
All DBs
Position
1808511..1810676
Genome browser
AA seq
721 aa
AA seq
DB search
MQGQTQSISFDGREIRLTTGRFAPQAGGSVLVECGDTAVLVTATRSGGREGIDFLPLICD
YEERLYAAGRIPGSYQRREGRPPERATLTARLIDRPMRPLFPAWLRDDLQVVATCLSLDE
RVPADVLAVTGASIATLLAGIPFNGPMAAVRVGLLGDDFVLNPSYREIERGDLDLIVAGT
PDGVVMVEAGGNQLPEQDVIEAIDFGYEAICELIKAQEQLLKDLGIEQVKPETPTQDTTV
PAYLEKQCTKAISEVLKKFDQTKDERDKALDAIKAEAAEAIAGLKEDDAIRVATASNSKL
LGNSFKALTKTLMRQQILKDGKRVDGRALDEVRAISALAGVLPRRVHGSGLFQRGLTQVL
STATLGTPSDAQEMDDLHPSTEKLYLHHYNFPPYSVGETRPMRSPGRREIGHGALAERAI
LPVLPAKDTFPYVVRVVSEVLSSNGSTSMGSVCGSTLSLMDAGVPLKAPVSGAAMGLIKE
GDDIRILTDIQGIEDFLGDMDFKVAGSEKGITALQMDMKITGLPVKTIAEAINQARPARL
HILEKMLEAIDTPREGLSPHAPRLLSFRIDPELIGTVIGPGGRTIKGITERTNTKIDIED
SGIVTIASHDGAAADEAQKIIEGLTRKVNEGEVFSGSITRIIPIGAFVEILPGKEGMIHI
SQLSEARVEKVEDVVKVGDEVTVRVREIDNRGRINLTLRGVPQSGDGAGEEPQPTPVAPL
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaggacaaacccagtcgatctcctttgatggacgcgagattcgactgaccaccgga
cgttttgccccccaggcgggcggatccgttcttgttgaatgcggagacaccgccgtgctg
gtgaccgccacccgctccggcggacgggagggcatcgattttctgcctctgatctgcgat
tacgaggagaggctctacgccgctggtcggatccccggcagctaccagcggcgtgagggt
cgtccccccgagcgggccaccctcaccgcccgtctgatcgaccggccgatgcggcccctg
ttcccagcttggctgcgggacgaccttcaggtggtcgccacctgtctgtccctggacgaa
cgtgtcccggcggatgtgcttgccgtgaccggtgcctccatcgccacgctgctggcgggc
attcccttcaatggtccgatggcggccgtgcgggtgggcctgctcggcgatgacttcgtg
ctcaacccgagttatcgcgaaattgaacgcggtgatctcgatctgatcgtcgccggcacc
ccggatggtgtggtgatggtggaggctggtggcaaccagctacccgaacaggatgtgatc
gaagcgatcgacttcggttacgaagcgatctgcgaattgatcaaagcccaggagcaactg
ctgaaggatctgggcatcgaacaggtgaagccggagacccccacgcaggacaccacagtg
ccggcttacctggagaagcagtgcaccaaggcgatcagcgaggtgctcaagaaattcgac
cagaccaaggatgagcgcgacaaggcccttgatgccatcaaggcggaagccgctgaagcc
atcgccggcctgaaggaggacgatgccatccgtgtggccaccgcctccaattcgaagctg
ctcggtaacagcttcaaggcgctgaccaaaaccctgatgcgccagcagatcctcaaagac
ggcaagcgagtagacggtcgcgccctggatgaggtgcgggccatcagtgccttggctggg
gtcctccctcgacgggtccatggttccggcctattccagcgtggtctcacccaggtgctc
tccaccgccaccctgggcacacccagcgatgcccaggagatggatgacctccatcccagc
accgagaagctgtacctgcaccactacaacttcccgccttattccgtcggcgaaacccga
ccgatgcgctccccaggacgccgcgaaattggtcatggcgccttggccgaacgggccatc
ctgccggtgcttcccgccaaggacaccttcccttacgtggtgcgggtggtgagtgaagta
ctcagttccaacggctctacctcgatgggctccgtctgcggcagcaccctgtcgctgatg
gatgccggagtccccctcaaggcaccagtgagcggtgcggccatgggcttgatcaaggag
ggcgatgacatccgcatcctcacggacatccagggaatcgaagatttcctcggcgacatg
gatttcaaagtcgcaggcagcgagaagggcatcacggccctgcagatggacatgaagatc
accggtctgccggtgaagacgatcgccgaggcgatcaaccaggcccgtccagcccgtctg
cacatccttgaaaagatgctggaggcgatcgacacaccacgcgaaggcctgtccccccat
gccccgcgcctgctgagcttccggatcgatcccgagctgattggcacggtgatcggtccc
ggtggccgcacgatcaaaggcatcaccgagcgcaccaacaccaagatcgacatcgaggac
agcggaatcgtcaccatcgcctcccatgacggtgcggcggctgatgaagctcagaagatc
atcgaaggcctcacccgcaaggtgaatgaaggcgaggtgttctcaggatcgatcacccgg
atcatccccatcggtgccttcgtcgagatcctgcctggcaaggaaggcatgatccacatt
tctcaactctccgaagccagggtggagaaggtggaggacgtcgtgaaggtgggtgacgag
gtcaccgtgcgtgttcgggaaatcgacaaccgcggccggatcaacctcaccctgcggggc
gtgccccagagcggcgacggtgccggggaggagcctcagcccacccctgtggcaccgctg
agctga
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