Parasynechococcus marenigrum: SYNW2496
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Entry
SYNW2496 CDS
T00144
Name
(GenBank) Type II alternative RNA polymerase sigma factor, sigma-70 family
KO
K03086
RNA polymerase primary sigma factor
Organism
syw
Parasynechococcus marenigrum
Brite
KEGG Orthology (KO) [BR:
syw00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SYNW2496
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syw03021
]
SYNW2496
Transcription machinery [BR:
syw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SYNW2496
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
DUF1118
Motif
Other DBs
NCBI-ProteinID:
CAE09011
UniProt:
Q7U3D6
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Position
2399426..2400412
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AA seq
328 aa
AA seq
DB search
MGIPLDSSGSTAKSSRKSPALPSTGRRASTRQGGRLATDSIGFYLSSIGRIPLLTAAEEI
ELAHHVQEMKQLQELPEEELTSRHRHKIRMGKRARDRMMAANLRLVVSVAKKYQNQGLEL
LDLVQEGAIGLERAVDKFDPAMGYKFSTYAYWWIRQGMTRAIDNSARTIRLPIHISEKLS
KMRRISRELSHRFGRQPNRLELASAMGIEPRELEDLISQSAPCASLDAHARGEEDRSTLG
ELIPDPNGEEPMEGMDRSIQKEHLGGWLSQLNEREQKILRLRFGLGGEEPLTLAEIGRQI
NVSRERVRQLEAKAILKLRLMTDHQQAA
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggggatccctctggactcttccggatcgactgcaaagtcttcccggaagtcacctgcc
ttgccatccactggacggcgggcatcaacgcgtcaaggcggccgtctggccaccgattcc
atcggtttttatctcagcagcatcggtcgcattcctctgctgacagccgctgaagagatt
gaactggcgcaccacgtccaagagatgaagcaacttcaggaactccctgaagaggagctc
acctcccgtcatcgtcacaaaatccgcatgggcaaacgtgcccgggatcggatgatggcg
gccaacctccgccttgtggtcagcgtcgccaagaagtaccagaaccagggactggaactg
ctggatctggttcaggagggtgcgatcggactcgaacgggccgtcgataagttcgacccg
gccatgggatacaagttctccacctacgcctactggtggatccgccaggggatgactcgc
gcgatcgacaacagcgcccgcaccatccggctgccgattcacatcagcgaaaagctctcc
aagatgcggcgcatctcgagagaattgtcgcatcggtttggacgtcaaccaaatcgactg
gaactggccagtgccatgggcattgagccgcgcgaactggaggatctgatctcccagagc
gctccctgtgcatcgctcgatgcccatgcccgcggcgaggaagaccgcagcaccctcggt
gagctgattccagaccccaacggtgaggagccgatggaaggcatggaccgcagcatccaa
aaggagcatcttggtggttggctgtcccagctcaatgagcgggaacagaagatcctgcgt
cttcgcttcggtcttggcggtgaagagccgctgacccttgcggagatcgggcgtcagatc
aatgtgtcccgcgagcgggttcgtcagctggaagccaaggccatcctcaagctgcgcttg
atgaccgatcaccagcaggccgcctga
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