Synechococcus sp. WH 7803: SynWH7803_1098
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Entry
SynWH7803_1098 CDS
T00524
Symbol
rhlE
Name
(GenBank) Putative ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
syx
Synechococcus sp. WH 7803
Pathway
syx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SynWH7803_1098 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syx03019
]
SynWH7803_1098 (rhlE)
Enzymes [BR:
syx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SynWH7803_1098 (rhlE)
Messenger RNA biogenesis [BR:
syx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SynWH7803_1098 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
ERCC3_RAD25_C
CMS1
Motif
Other DBs
NCBI-ProteinID:
CAK23524
LinkDB
All DBs
Position
1002516..1003715
Genome browser
AA seq
399 aa
AA seq
DB search
MEALQAKGYSHPSPIQAQAIPAVIDGRDVMAAAQTGTGKTAGFTLPVLERLRHGKRAGRA
QIRALVLTPTRELAAQVLENVKAYSRHLPLRSDVVFGGVKANPQIDRLRGGVDLLVATPG
RLLDLHQQGALRFDQLECLVLDEADRMLDMGFIHDIRRLIRLMPAKRQTLLFSATFSAPI
RKLASGLLHDPVHLQVTPENQTARSVEQVVHPCDMARKSDLLSHLIRTGEWRQVLVFSRT
KHGANRVADRLNKEGLAAAAIHGNKSQGARTRALQGFKQGSVRVLVATDIAARGIDIQQL
PHVVNLDLPNVAEDYVHRIGRTGRAGETGHAVSLVAAEEALLLKAIERLTGEELTRQTVD
GFEPTVLKAPPLDLSGGRRRSPGKPRARRAPSPVRGRHR
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
ttggaagcactccaggccaagggctactcccacccatccccgattcaggcgcaggcgatt
ccggcagtgatcgatggcagggatgtgatggcagctgcacaaacgggtacggggaagaca
gctggtttcaccctgccggtgctggagagattgcgccatggcaagcgcgcaggacgggcc
cagattcgcgctcttgtgctgacgcccaccagggaacttgctgctcaggttttggagaac
gtgaaggcctacagcaggcatctgcctctccgcagcgatgttgtgtttggtggcgtaaag
gccaacccacagattgatcgcttgcgtgggggggttgatctgcttgtggccaccccaggg
cgtttgcttgatcttcaccaacagggtgctctgcgctttgaccagctcgaatgtctcgtg
ctggatgaagcggatcgcatgctcgatatgggcttcatccatgacatccgccgcctgatc
aggctgatgcctgcgaagcgccaaacgcttcttttttcagccacgttcagtgcgccgatc
cgcaagttggcatctggcctcctccatgatcctgtgcatcttcaggtcacgcctgaaaat
caaacggcgcgatcggtggagcaagtggtgcacccctgcgacatggcgcgcaagagcgat
ttgttaagccacctcattcgcacgggcgaatggcgtcaggtgcttgtgttttcacgcacg
aagcatggcgccaatcgggtggctgaccgtctcaacaaggaggggcttgcggcggcagcc
atccatggcaacaagagtcagggggcgcggacccgtgccttgcagggtttcaagcaggga
agcgtccgcgtgcttgttgccacggatatcgccgccagaggcattgatatccagcagctc
ccccatgttgtgaacctcgatctgccgaatgtggcggaagactatgtgcatcgcattggc
cgtaccggccgtgccggggaaacggggcatgccgtgtcccttgtggccgccgaagaagcg
ctactgctgaaagcgatcgagcggctgacgggagaagagctgacgcgacagaccgttgat
ggctttgaacccaccgtgctcaaagctccccctctggatctcagcggaggccgcagacgc
tcacccgggaaacccagagcgcgcagggcaccctcacccgttcgtggtcgtcatcgttaa
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