Synechococcus sp. WH 7803: SynWH7803_1106
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Entry
SynWH7803_1106 CDS
T00524
Symbol
vacB
Name
(GenBank) Exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
syx
Synechococcus sp. WH 7803
Pathway
syx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SynWH7803_1106 (vacB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syx03019
]
SynWH7803_1106 (vacB)
03016 Transfer RNA biogenesis [BR:
syx03016
]
SynWH7803_1106 (vacB)
Enzymes [BR:
syx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SynWH7803_1106 (vacB)
Messenger RNA biogenesis [BR:
syx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SynWH7803_1106 (vacB)
Transfer RNA biogenesis [BR:
syx03016
]
Prokaryotic type
tRNA degradation factors
SynWH7803_1106 (vacB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
OB_HELZ2
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
CAK23532
LinkDB
All DBs
Position
complement(1010336..1012714)
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AA seq
792 aa
AA seq
DB search
MKFTVADLLDQVPADGSLDQAKLEKILRLSNRTEKQSLGLALQALSRLGILSTDDSGAVQ
RCITDDLVEARLRCSSKGFCFAIRDDGGDDIYIRDHQLNHAWNGDRVLVRITREGGRRRS
PEGGVQCILERATTSLLAAVEQQEDKLVAIPLDDRILATIELASEDAGHADTPANEAVAE
VILDRYPVAQFSAQGHVSRSLPLNGGPEADRDLMLTKANFHQRPTPPRASLKAPAAKKRV
DCTDQPALLLTGWSATDAVSLPALHVIPHEGGTRLWIHAPAVAERLAPGNSLDQWLLNQS
ESICLGQHWLPLLSPALTKASAFRVGEVQDAVTLRLDLSADGEWKDWDFSLTRIRPVAQI
TQTHLEALAGRKPKSRAIPADLKAIKEQISQLETLIFSAKSAHESERSAGLIELDLPRPQ
LDMLGDLNPLAPDGDAANWAEPLNPSSPESVMAVLLRTAHRVWHAQSEDLKLPSVLLGAP
PADDSALMDVAKAAIALDVPLELDEDGTPSADELAKAVAGCQSSRVLNLQLRHALPDSLY
RLNEAAATAGNPQPDADNTTDPDSETTTSDDVDEQTSRAESPGSVGAQSLAPWCCPTLHY
ADLLNQQVLCQLLNEGKDRPSVRHKTKVGIGSRGAGDQITWPLFTASQDQKLSELFRERI
IQRLNTRRRQVSELRKDVVAMAQARSAEPMVNQEQTGVISGVQSYGFFVEIPPSMVEGLV
HVSSLNDDWYEYRSRQNRLVGRRSRRVYQLGDEVKVKVLKVDVLRNQIDLEVVPAEESDE
QAAPLPVAVSDS
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaaattcacggtcgccgatctgctcgaccaggttcccgctgatggaagcctggaccaa
gcaaaactcgagaagatcctaaggctgtcgaatcgaacggaaaagcagtctctggggctg
gcactgcaggcgctctcgcgtcttgggatcctgagcaccgatgacagcggagcggttcaa
cgctgcatcactgatgacctggtggaagcccgcctgcgttgcagtagcaaaggcttttgt
tttgcaatccgcgatgacggcggtgatgacatctacatccgcgaccatcagttgaatcac
gcctggaacggtgatcgcgttttggtgcgcatcacccgggaagggggtcgccgtcggtct
ccagaaggaggtgtgcaatgcatcctggaacgggccaccacgagtctgcttgcggccgtg
gaacagcaagaggacaagctggtggcgatccccctcgacgacaggattctggcgaccatc
gagcttgcctccgaggatgcaggccatgcggacacacccgcgaatgaagcggttgccgag
gtcattcttgaccgctatcccgtcgcccagttctcagcccagggccatgtctcccgctcc
ctgcctctcaatggcggacccgaagcggatcgggacctgatgttgacgaaagctaatttc
catcagcggcccaccccacctcgcgcttcgctgaaggcaccggcagccaaaaagcgagtg
gactgcacagatcaacctgcactcctgctcacaggctggtctgcaaccgacgctgtctcc
ctgccggcactgcacgtcattccccacgaaggagggacgcgcctttggatccatgctcca
gcagtcgccgaacggctggcccctggaaacagtctcgaccagtggctgttgaatcaatcg
gagagtatctgcctcggccaacattggttgccgcttctgagccctgccttgacaaaggcc
agcgcatttcgcgttggcgaagtgcaggatgcggtcacgcttcggctggatctcagtgct
gacggtgaatggaaggattgggacttctccctaaccagaatccgtccggttgcacagatc
acccaaacacatctggaagctctcgcaggacgcaaaccgaaatcaagggcgattccagcg
gacttgaaagcgatcaaagagcagatcagccaactggaaactttgattttcagtgccaag
agtgctcatgaaagcgaacgatctgccggtttgatcgaactcgacctgcccaggcctcag
ctcgacatgctcggggatttaaacccactggcccccgatggtgatgcagccaactgggca
gagccgctgaatccgagctcaccggaatcggtgatggcggtgctgttgcgcacggctcac
agggtctggcatgcgcagagcgaagatttgaaactcccgtccgttctgctgggtgcaccc
ccagccgacgactccgctctgatggacgtggccaaggcagccattgccctggatgttcct
ctcgaactcgatgaagacggaacaccgtccgccgatgaactcgccaaggctgttgccggt
tgtcaatcaagccgcgtgctcaatctccagcttcgtcatgcactgcctgacagcctttat
cgcctcaatgaggctgctgcgaccgccggaaacccgcagcccgatgctgacaacaccacc
gatccagactctgaaaccaccacatcagacgatgttgacgagcagaccagccgagcggag
agtcccggttcggttggcgctcaatccctggctccctggtgttgcccaacgctgcattac
gccgatcttttgaatcaacaggttctttgtcaattgctcaatgaaggcaaggaccgtcca
agcgtgcggcacaaaaccaaggtggggattgggtctcgaggagcaggcgatcagatcacc
tggccgctgttcacggcctcgcaggatcaaaaactctcagagctgtttcgggagcgcatc
atccagcgcttgaacacacgccgccggcaggtgtcagagctgcgcaaagacgtggtcgcc
atggcgcaagccagaagcgctgaacccatggtgaatcaggagcaaaccggagtgatcagc
ggtgtgcagagttatgggttttttgtggagatccctccatcgatggtggaagggttagtg
catgtgagctcattgaatgacgactggtacgaataccgttcgcgccagaatcgactcgtc
ggacgacgcagtcgcagggtttatcagctcggcgatgaagtgaaggtgaaggtgttgaaa
gtggatgtgctgcgcaaccagatcgaccttgaagtggtgcccgcggaagaatctgacgag
caggcagcccccctgcctgtggccgtctcagactcatga
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