Synechococcus sp. WH 7803: SynWH7803_1480
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Entry
SynWH7803_1480 CDS
T00524
Symbol
mfd
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syx
Synechococcus sp. WH 7803
Pathway
syx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
SynWH7803_1480 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syx03400
]
SynWH7803_1480 (mfd)
Enzymes [BR:
syx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SynWH7803_1480 (mfd)
DNA repair and recombination proteins [BR:
syx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
SynWH7803_1480 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
RecG_dom3_C
AAA_30
Motif
Other DBs
NCBI-ProteinID:
CAK23906
UniProt:
A5GLU1
LinkDB
All DBs
Position
complement(1354129..1357671)
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AA seq
1180 aa
AA seq
DB search
MPLSSLVRLLQTSALSGELCERIERSDRLLLRGAGRAARALVASAMARHQDRPLLVVVPT
LEEAGRWTALLELMGWRSAQLYPTSEGSPYEPFDPTSEITWGQLQVLSELQVEGQSRDLA
IVATERCLQPHLPPPQVLADRCRTLRKGDSIDLEALAVSLSQLGYERVSTIDQEGTWSRR
GDIVDVFPVSSELPVRLEFFGDELDKLREFDPASQRSLDPIDSLRLTPTGFSPLIAEALR
ESMPDGLDQLLSDQALNELLEGGTPEGMRRLLGLAWQEPASLLDYLPAACCVAIDERRHG
RSHGEQWFDHAEEHRGDLGLPLPRLHRSIDQAMALASAFHGFDLAELQEQDDHPNAFDLN
SRPVPAYPNQFGKLGELIKGYQQQKQAVWLLSAQPSRAVALLEEHDCISRFVPNAADAGA
IERLVEQSTPVALKTRGTADLEGLQLPAWRVVLITDREFFGQQTLTSTGYVRRRRKAASR
TVDPNKMRPGDFVVHRNHGIGRFQKLEKLAISGEVRDYLVVQYADGILRVAADQLGSLGR
YRANSDAPPQLSKMGGSAWVKAKERASKALRKVALDLVKLYAERHQAPGFAFPVDGPWQS
ELEESFPYEPTPDQLKATAEVKKDMEKSQPMDRLVCGDVGFGKTEVAIRAIFKAITAGRQ
VAMLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTAGERKSILEGLKKGTIDAVVGTH
QLLSKSTAFDKLGLLVVDEEQRFGVNQKEKIKALRKDVDVLTLSATPIPRTLYMSLSGVR
EMSLITTPPPLRRPIKTHLAALDEEAIRSAIRQELDRGGQVFYVVPRVEGIEDVAAQLRQ
MLPGLKLLVAHGQMAEGELESAMVAFNGGEADVMLCTTIVESGLDIPRVNTILIEDAHRF
GLAQLYQLRGRVGRSGIQAHAWLFYPGNASLSEAARQRLRAIQEFAQLGSGYQLAMRDME
IRGVGNLLGVEQSGQMEAIGFDLYMEMLQESLAEIQGQDIPSVDDTQVDLQVTAFIPADW
ITDADEKMAAYRAAAECLSGDELVELAALWADRYGALPGPVQSLLQLMNLKLLAKRCGFS
RIRPEKPNIALETPMEEPAFRLLRQGLPQHLHGRLVYQTGTGASAKVLARGLGVLPMDKQ
LDELKGWLEQMAAQIPGVDGLTTEQREQQQKERNEAVLSV
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcccctcagctccctggtgcgtctgcttcagacctcggcgctgagcggtgaactgtgt
gagcggatcgagcgctctgatcgcttgttgctgcgtggcgctggtcgcgctgcccgcgct
ttggtggccagtgccatggcccgccatcaagaccggcccctgctggtggtggtgcccacc
ctggaggaggccggtcgctggactgcgctgcttgagctgatggggtggcgcagtgcccag
ctgtatcccaccagcgaaggctccccctacgaacccttcgatcccaccagtgagatcacc
tggggacagctgcaggtgctcagcgaattgcaggtggaggggcaaagccgcgacctggcg
atcgtggccacagagcgttgccttcagccccacctcccgccgccgcaggttctcgctgac
cgctgccgcaccctgcgcaaaggcgacagcatcgacctggaggcgttggccgtgtctctt
agccaactgggatatgagcgggtgtcgacaatcgaccaggaaggaacctggagtcggcgc
ggggacatcgttgatgtatttccggtgagcagtgagctcccggtgcggcttgagttcttc
ggcgatgaactcgacaaactcagggagttcgaccccgccagccagcgatccctggatccg
atcgacagcctgcggttgaccccgactggcttcagccccctcatcgctgaagccctgcgc
gagtcgatgcccgatggactggatcagcttctcagtgatcaggctctcaatgagcttctc
gaaggcggcaccccggaaggcatgcgccggttgctcgggctggcctggcaggaacccgcg
tcacttctcgattatttgcctgcagcgtgttgcgttgccattgatgagcgccgccatgga
cgctcccatggtgagcaatggtttgatcacgccgaggagcatcgcggcgatctcggcctg
ccgttgccaagactccaccgttccatcgatcaggccatggctctggcctctgccttccat
gggttcgatttggcggagctccaggagcaggacgaccatcccaatgcctttgatctcaac
agccggccggtgccggcgtatcccaatcagttcggcaagcttggcgagctgatcaagggc
tatcagcagcagaagcaagcggtctggctgctgtcggcccagcccagtcgtgccgttgcc
ctgctcgaagaacacgactgcatcagtcgtttcgttcccaatgcggccgatgccggggcg
attgaacgcttggttgagcagagcacaccggtggccctgaaaacccgcggcaccgctgat
ctcgagggactgcagttgcccgcctggcgtgttgttctgatcaccgaccgcgaattcttc
ggccagcagacactcaccagcacgggatatgtgcggcggcggcgcaaggcggccagtcgc
accgtggatcccaacaaaatgcgccccggcgattttgtggtgcatcgcaaccacggcatc
ggtcgctttcagaaactcgaaaagctcgccatcagtggcgaggtgcgcgactacctcgtc
gtgcagtacgccgacggcattttgcgggtggcagccgaccagttgggaagtctgggccgg
taccgggccaacagcgatgctccccctcaactcagcaagatgggcggttcggcctgggtg
aaagccaaggaacgggccagtaaggctctgcgcaaagtggcgcttgatctggtgaagctc
tatgccgagcgccatcaggcccctgggttcgcctttccggtggatggtccttggcagagc
gagcttgaggagtcattcccctatgaaccaacgcccgaccagctcaaggccacggccgag
gtcaagaaagacatggagaagtctcaaccgatggaccggctggtgtgtggtgatgtgggc
tttggcaagaccgaggtggcgattcgggcgatcttcaaagccatcaccgcaggacgtcag
gtggccatgctcgcccccaccacggtgctggcccagcagcactggcgcaccctctccgaa
cggttcgctccgtatccgatcaaggtggctctgctgaaccggttccgtacggccggcgaa
cgcaagtccattctcgagggattgaagaaaggcaccatcgatgctgtggtgggcacccat
cagttgctcagcaaaagcacagcattcgacaagcttggtcttcttgtggtggatgaagag
cagcgcttcggcgtgaaccagaaggagaagatcaaagctctgcgcaaggacgttgacgtg
ctcacgctgtcagcaacaccgattccgcgcacgctctacatgagtctgtccggtgtgagg
gagatgagcctgatcaccacaccacctccgttgcggcgtccgatcaaaacccatctcgct
gctctcgatgaagaggcgatccgcagtgcgattcgtcaggaactggatcggggcgggcag
gtgttctacgtggtgcctcgcgtggaaggcattgaggatgtggccgctcagctgcgtcag
atgctgcctggactgaagctcttggtggcccacggccagatggctgagggtgaactggag
agcgccatggtggccttcaacggaggtgaagccgatgtgatgctttgcaccacgatcgtg
gaaagcggtctcgacattcctcgggtcaacacgattctcatcgaggatgcccatcgcttc
ggactcgcccagctgtatcagttgcgcggacgggtgggtcgcagtggcattcaggcgcat
gcctggttgttctatcccggcaatgcctcgttgagtgaggcagcgcgtcagcgactgcgg
gcgattcaggaattcgctcagttgggaagtggttatcaattggccatgcgcgatatggag
attcgcggcgtcggcaacctgctgggtgtggagcagagcggacagatggaagcgatcggc
ttcgatctctacatggagatgttgcaggagtctttggcggagatccaagggcaagacatt
ccttctgtggatgacacccaggtggatctccaggtcacagccttcattcctgcggactgg
atcaccgatgctgacgagaagatggctgcgtatcgggctgcagcggaatgcctcagcggt
gatgaactcgtggaactggctgcgctctgggccgaccgttatggcgcgctgccaggaccg
gttcagtccttgctgcagctcatgaatctgaagcttctggccaagcgctgcggtttttcc
cgcatccgtccggagaagcccaacatcgctctggagacgcccatggaagagcctgccttc
aggcttcttcgccagggcttgcctcagcatctccacggccgcttggtgtaccagaccgga
acaggcgcgtcggccaaggtgctggcccgcgggcttggggttttgccgatggacaaacag
ctcgacgagctcaagggttggctggagcagatggcggctcagatcccgggagttgatggt
ttgaccaccgaacagcgcgagcaacagcagaaggaacgcaacgaggctgttctcagcgtt
tga
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integrated database retrieval system
