Synechococcus sp. WH 7803: SynWH7803_1736
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Entry
SynWH7803_1736 CDS
T00524
Symbol
rpoD
Name
(GenBank) Alternative RNA polymerase sigma factor, sigma-70 family
KO
K03086
RNA polymerase primary sigma factor
Organism
syx
Synechococcus sp. WH 7803
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
SynWH7803_1736 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syx03021
]
SynWH7803_1736 (rpoD)
Transcription machinery [BR:
syx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SynWH7803_1736 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CAK24162
LinkDB
All DBs
Position
complement(1587697..1588638)
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AA seq
313 aa
AA seq
DB search
MPSAAAGVSETQRRRSSDPISWYLATIGRIPLLTPAEEIELGNQVQQLMQLTEDGSIAAD
SDQFDGKQRRLIRVGQRAKQRMMKANLRLVVSVAKKYQGKGLELLDLIQEGSLGLERAVE
KFDPTRGYKFSTYAFWWIRQSMTRAIACQSRTIRLPVHLSERLTTIRKVSLDLAHKLGAM
PSRLEIAEAMDMPVEELDSLLRQALTTSSLDAPVNGEEGRSFLGDLIADSSLEEPLDRVE
QRMHHEQLGRWMSHLSDQEQHVLTLRFGLNGNERHTLAEIGRLLDVSRERVRQVELKALR
KLRNLTRRVAPTF
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgccctcagccgcagccggggtttctgaaacccagagacgacgaagcagtgatccaatc
agttggtatctcgcaacgattggaagaattcctttgctgacgcctgccgaggaaatcgag
cttggaaaccaagtgcagcagctgatgcagctcactgaagatgggtcgattgcagcggac
agtgatcagtttgatggcaagcagcgccgtttgattcgggtgggtcagcgtgccaaacaa
cgcatgatgaaagccaacctgcgtttggttgtcagcgtcgcgaagaaatatcagggcaag
ggtctagagcttctcgatttgatacaagaaggttctctcggtcttgaacgtgccgttgag
aaatttgaccccacccgtggttataaattttccacttatgcgttctggtggatccgccag
agcatgacccgggcgattgcctgtcagtcgcgcacgatccgtttgcccgttcacctcagc
gaacgtctcaccaccatccgcaaggtgagtttggatctcgcgcacaagctgggagccatg
cccagccgccttgaaatcgccgaggcgatggatatgccagtggaggagcttgactccctg
ctcagacaggcactgaccaccagcagcctggatgcaccggtgaacggagaggaagggcgc
agttttcttggcgatctgatcgctgattcctccctcgaggagcctctcgaccgggtggag
cagcggatgcatcacgagcagctcggtcgctggatgagccacctcagtgatcaggagcag
catgtgctcaccctgcgtttcggcctgaacggcaacgaacgccacaccctggccgaaatc
ggccggctcctcgacgtgtcccgcgagcgcgtccgtcaggtggagctcaaggccttgcgc
aagcttcgcaatctcacccgtcgggtggcacccacgttctga
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