Synechococcus sp. WH 7803: SynWH7803_2060
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Entry
SynWH7803_2060 CDS
T00524
Symbol
rpoC2
Name
(GenBank) DNA-directed RNA polymerase beta' chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syx
Synechococcus sp. WH 7803
Pathway
syx03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SynWH7803_2060 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syx03021
]
SynWH7803_2060 (rpoC2)
03400 DNA repair and recombination proteins [BR:
syx03400
]
SynWH7803_2060 (rpoC2)
Enzymes [BR:
syx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SynWH7803_2060 (rpoC2)
Transcription machinery [BR:
syx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SynWH7803_2060 (rpoC2)
DNA repair and recombination proteins [BR:
syx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SynWH7803_2060 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Biotin_lipoyl_2
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
CAK24486
UniProt:
A5GNH1
LinkDB
All DBs
Position
complement(1880743..1884834)
Genome browser
AA seq
1363 aa
AA seq
DB search
MTSTPSKSRKSSKGSKAAKAAASAPETRPLAKTPPPFRNRVVDKKGLKQLVAWAYKHHGT
AATSAMADQLKDLGFRYATQAAVSISVNDLKVPEAKQNLLGQAEELITATEESYRLGVIT
EVERHTKVIDTWTETNERLVDAVKKNFNQNDPLNSVWMMANSGARGNMSQVRQLVGMRGL
MANPQGEIIDLPIRTNFREGLTVTEYVISSYGARKGLVDTALRTADSGYLTRRLVDVAQD
VIVREDDCGTSRCILVKAEDGKYGNRLVGRLTADQVVGADGEVLAERNTEIDPPLSKRFE
KAAVQAVSVRSPLTCEANRSVCRKCYGWALAHNELVDLGEAVGIIAAQSIGEPGTQLTMR
TFHTGGVSTAETGVVRSKLEGTVEFGAKARVRPYRTPHGVNAQQAEVDFNLTIQPSGKGK
PQKIEITNGSLLFVDNGQAIDADVTVAQIAAGAVKKSVEKATKDVICDLAGQVSYDPSIQ
PREVTDRQGNITHKAQRLGRMWVLAGDVYNLPPNARPVVTAGATVTEGQVLAEASQASEY
GGAIRLREALGDSREVQIVTTAMTLRDFKLQGESTHAGEIWNLEAKDGTRYRLNTIPGSK
IGSGEVVAELNDDRFRTQTGGLVRFAPGLAIKKARSAKNGYEVNKGGTLLWIPQETHEIN
KDISLLMITDGQWIEAGTEVVKDIFSQTAGIVTVTQKNDILREIIVRSGSFHLCTEKKAL
ERFQGDGVMVNPGEPIAKGISTETMVYVQTVETPEGSGLLLRPVEEYTIPNEAQLPDLGH
VKQPNGPHLGLKASQRLAFKDNELVKSVEGVELLRTQLMLETFDTTPQMTVDVEAVPDKR
AKTIERLQLVILESILVRRDTISDSSHGSTHTELQVEDGQSIKAGEVIATTQILCKQEGV
AQMPEATADEPVRRLIVERPEDTLTISTNSQPVVTVGQRIVDGEELAAGQPSDCCGEVEK
VDSTSVTLRLGRPYMVSPDSLLHVRDGDLVQRGDGLALLVFERQKTGDIVQGLPRIEELL
EARRPRESAILCKKPGTVEIKQGEDDENTTVTVIEADDAVSEYPILLGRNVMVSDSQQVT
AGELLTDGPINPHELLECFFEDLRSRKPLMDAAQEAIAKLQHRLVTEVQNVYKSQGVSID
DKHIEVIVRQMTSKVRVEDAGDTTLLPGELIELRQVEDTNQAMSITGGAPAEFTPVLLGI
TKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSGFEEE
LKAEAGPHPDILAEDPAGYRRMQNLRPDYTVDMPAAPAGDATAVLDDPSDADMEATRSRH
GIEAGSNFAAFARPDADNELKEEQVVDAEAVEGLQEEGLLSDE
NT seq
4092 nt
NT seq
+upstream
nt +downstream
nt
atgacttccactccttccaagtcccgcaagtcttccaagggatccaaggctgctaaggct
gctgcctccgctcccgagacccgtccactggccaaaacgccccctcccttccgcaaccgt
gttgtggacaagaaggggctgaagcagctggtggcttgggcttacaagcatcacggcacc
gcggccacctcggccatggccgaccagctcaaggatctcggatttcgttatgccacccag
gcggcggtctccatctccgtgaacgacctcaaggttccggaagcgaagcagaacctcctg
ggacaggctgaagagctgatcactgccacggaggagtcctatcgcctcggtgtgattacg
gaggttgagcgtcacaccaaggtgatcgacacctggacagagaccaatgagcgtctggtt
gatgcggtcaagaagaacttcaaccagaacgatccgctcaattccgtgtggatgatggcc
aactccggcgccaggggaaacatgtcccaggtgcgccagttggtgggcatgcgcggcctg
atggccaaccctcagggggagatcatcgacttgccgatccgtaccaatttccgtgaggga
ctcaccgttacggagtacgtgatctcctcgtacggcgctcgcaagggcctggttgataca
gctctgcgcaccgccgactccggctacctcacccgccgactcgtggatgtggctcaggac
gtgatcgtccgtgaggacgactgcggcaccagccgctgcatcctggtgaaggcggaagac
ggcaagtacggcaaccgactggtgggacgtctcaccgccgatcaggtggtgggtgctgat
ggagaggtgttggctgagcgcaataccgaaatcgatccacccctgtcgaaacgcttcgag
aaagccgctgttcaagcggtgagcgtgcgttcaccgctcacctgcgaggccaatcgttcc
gtttgccgcaagtgctacgggtgggcgctggctcacaacgagctggtggacctcggagag
gccgtcggcatcattgctgctcagtccattggtgagccgggaacccagctcaccatgcgg
acgttccacaccgggggtgtgtccaccgccgagaccggcgtggtgcgctcaaagctggaa
ggaacggtggaattcggtgccaaggcgcgtgtgcgcccgtaccgcaccccccatggcgtt
aacgctcagcaggcagaggttgatttcaatctcacgatccagccatccggtaagggcaaa
ccccagaagattgagatcaccaacggctctctgctctttgtggacaacggtcaggccatc
gacgccgatgtcaccgttgcccagatcgcagccggcgcggtgaagaaaagtgtggagaag
gccaccaaggacgtgatctgtgacctggccggtcaggtcagctatgacccctcgatccag
ccccgggaggtcaccgaccgtcagggcaacatcacccacaaggctcagcgactgggccgg
atgtgggtcctggccggagatgtgtacaacctgccgcccaatgcgcgtccggtggtgact
gccggtgcaaccgtgacggagggccaggtgctcgccgaggcgagccaggccagcgagtac
ggcggtgcgattcgtctgcgggaagctctcggcgattcccgtgaggtgcagattgtcaca
accgccatgaccctcagggatttcaaactgcagggtgagtcaacccatgctggagagatc
tggaatctggaggccaaggacggcacccgttatcgcctcaacaccatcccgggcagcaag
atcggcagtggcgaagtggttgcggaactcaacgacgaccgcttccgcacccagaccggt
ggactggtgcgattcgctcctggactggcgatcaagaaagcccgttctgccaagaacggt
tacgaggtgaacaagggtggaaccttgctctggattccccaggagacccatgagatcaac
aaggacatctctctgttgatgatcacggacggccagtggattgaggccggcaccgaggtg
gtcaaggacatcttcagtcagaccgctggcatcgtcaccgtcacccagaagaacgacatc
cttcgcgagatcatcgttcgtagcggcagcttccatctctgcaccgaaaagaaagcgctg
gagcgcttccagggtgatggcgtgatggtcaatcccggcgagccaatcgccaagggcatc
agtaccgaaaccatggtgtatgtccagacggtggaaacaccggaaggcagcggtctgctc
ctccgccccgttgaggagtacacgattcccaatgaggctcagctgcctgatctgggtcat
gtcaaacagcccaatggaccgcaccttggcctcaaggccagccagcgtctcgccttcaag
gacaacgaactggttaagtctgtggagggtgttgagctgctgcggacgcagttgatgctg
gagacctttgacaccactcctcagatgactgtggatgtggaagcggtccccgacaagcgg
gccaagacgatcgaacgtcttcagctggtgatcctcgagagcattcttgttcgccgtgac
accatttccgactccagtcacggatccacccacaccgagcttcaggtggaggatggtcag
tcgatcaaggctggtgaggtgattgccaccacccagatcctttgcaagcaggagggtgtc
gcccagatgcctgaggccacagccgacgagcctgtgcgccgattgatcgtggagcgtccg
gaagacaccctcaccatctccaccaactcccagcccgtcgtaacggtcggtcagcggatc
gtggacggagaagaactcgccgctggtcaaccctccgactgctgtggtgaggttgagaag
gttgacagcacgagcgtcaccctgcgcctcggccggccttacatggtctcgccggattcc
ttgctgcacgtccgtgacggtgatctggtgcagcgcggtgatggcctcgctctcctggtg
ttcgaacgccagaagacaggtgacatcgttcagggtctgcccaggatcgaggaactgctg
gaagctcgccgtccgcgcgaatcagcgattctctgcaaaaagccaggaaccgttgagatc
aagcaaggtgaagacgatgagaacaccacggtgacggtgatcgaggccgacgacgctgtc
tccgagtaccccattctcctggggcgcaacgtgatggtgagtgacagtcagcaggtcacg
gccggtgagttgctgacggacggacccatcaatccccacgagctgctggagtgtttcttc
gaggatctgcgcagccgcaagcccttgatggacgcggcgcaggaagccatcgccaagctc
cagcaccgtctggtgaccgaggttcagaacgtctacaagtcccagggcgtgtccatcgac
gacaaacacatcgaggtgattgtgcgtcagatgaccagcaaggtgcgtgttgaggatgcg
ggggataccaccctgctgcccggtgagttgatcgagctccgtcaggtggaagacaccaat
caggccatgtcgatcactggaggagctcctgccgagttcactcccgttctgctgggtatc
accaaggcgtccctgaacaccgacagcttcatctctgcagcgtccttccaggaaaccacc
cgtgtgctcaccgaagcggccatcgaaggcaagagcgattggctgcgcggccttaaggaa
aacgtgatcatcggtcgcctgattcccgctggtaccgggttcagcggctttgaggaggag
ctcaaggctgaagccggtccgcaccccgacatccttgccgaggatccggctggctaccgc
cgcatgcaaaaccttcgccctgactacaccgtggacatgcctgctgcaccagcgggtgat
gctacggcggtcttagacgatcccagcgatgccgacatggaggccacccgcagtcgccac
ggcattgaagctggcagcaacttcgcagcttttgcccgtcctgatgccgacaatgagctg
aaggaggagcaagtggtggatgctgaagccgtggagggtctgcaggaagaggggcttctc
agtgatgaatga
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