Synechococcus sp. WH 7803: SynWH7803_2190
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Entry
SynWH7803_2190 CDS
T00524
Name
(GenBank) HrpA-like helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
syx
Synechococcus sp. WH 7803
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
syx03019
]
SynWH7803_2190
Enzymes [BR:
syx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SynWH7803_2190
Messenger RNA biogenesis [BR:
syx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SynWH7803_2190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
CAK24616
UniProt:
A5GNV1
LinkDB
All DBs
Position
2009305..2011776
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AA seq
823 aa
AA seq
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MILQAPPGAGKTTRVPLALIGELAGGASIEGKILLIEPRRLAARAAAARLADSLGEPIGE
RVGYSVRNEQRRSSRTCIEAITDGLFLRRLQAHPDLTGVSCVIFDEFHERRRDSDVALAL
LREARELLRPDLRLLLMSATLQLGDLSRQLDGARTLCSEGRAFPVETLHCAPRNQESLDQ
HVLRALEAELPYLDSEGLPNAHPPVVLVFLPGLKEIERCLRRIKSSNQLKAWESVPLHGQ
LSLKQQAYALQPCNREWDGRVVLATSIAESSLTLNGVRLVIDAGLSRHTRFDPGTGMEGL
ETVPASQASADQRRGRAGRQAPGRCVRLWSPAEQQRRPLQDLPELQRADPQPTLLDLARW
GAGLGQELAWLEPPPQALFLEGRQQLQQLGLIDREGQITQEGRHVATFGVHPRLGLMMAQ
ARRWGVEPLGCDLAALLSERNSPALRAEGSDLLRGLQTLRQSKGRHATTGAGAILQQSRQ
WQRELDRLKDIPRGTPPHETWDLMAGVLVAKAFPEWLARARDQRPGQFLLRQGRGATLPD
HDPLHHAEALAVAQLDLSGRDARIRLAVPMPRSWLENLAESEGQWREDVDWDDRQQKIRA
ERILSLGALELKRQPWPKPSAEAISAVLLERLRREGLALLPWSKRNEQLRRRLQLAHLRI
GTPWPCRETSFLQDHPEHWLMDASLECRSWGELDEAILTQSLWGDVAWSDRRELDALLPT
TIRIPSGRDAALTYEEEGVVLAVKLQEMFGCTTSPHLLNGALPITLELLSPAGRPLQRTR
DLQGFWNGSYHDVRKEMRGRYPKHPWPERPAEAVATRKTKKAS
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
gtgatcctgcaggctcctccaggagctggaaaaaccacccgggttccgctggcgctgatc
ggcgagcttgctggtggtgcgtccatcgaaggcaagatcctcctgatcgaacccaggcga
ctggcagctcgagcagcagcagcgcgtcttgcggactctctcggcgaacccatcggcgaa
cgggtgggttactcagtacgcaacgaacagaggcgatcctcaagaacctgcattgaagcc
atcaccgatggcctattcctgcgcaggctgcaggcccatcccgatctcaccggggtgtcc
tgcgtgatcttcgatgagtttcatgaacgccgtcgcgacagcgacgtcgcccttgcactg
ctgagggaagccagagagctgctcaggcccgatctccgactgcttttgatgtcggccaca
ctccagctgggcgacctcagccgacagttggacggcgcgaggacactgtgcagcgaggga
cgggccttccccgtcgagacccttcactgtgcaccgcgcaaccaggagtcccttgatcag
catgtgctccgcgcgcttgaggcggaactgccctatctggacagcgaagggctgcccaac
gcccatcctccagttgtcctggtctttctcccaggtctcaaggaaattgaacgctgcctg
cggcgaatcaaaagctcaaaccagctgaaggcctgggagagcgtgccccttcacggacag
ctgtcgctgaagcaacaggcctacgcccttcaaccctgcaatcgcgaatgggacggccgc
gtggtgctcgccacatccattgctgagagctcactcaccctgaacggcgtgcgactcgtg
atcgacgccggcctgagccgtcacacgcggtttgacccgggcacgggcatggaggggctg
gagacagtgcccgccagtcaagccagcgctgatcaacgacggggccgtgccggacgacag
gcgcctgggcgctgcgttcgcctttggtctccagccgaacaacagcgtcgtcctctgcaa
gatctgccagaactccaacgagctgacccgcaaccaaccctgctcgatctcgcccgctgg
ggagcagggctaggacaggagcttgcctggctggagccacctcctcaagctctctttctt
gaagggcgtcagcagctgcagcagctcggcctcattgatcgcgaagggcaaatcacccag
gaagggcgccatgtggcgaccttcggcgttcatccaaggttgggactgatgatggcgcaa
gcccgtcgctggggagtcgagccgcttggctgcgatctcgcggcgctgctgagcgaaaga
aactctccggccctgcgtgccgaagggagcgacctccttcgcggccttcagacgctgcgg
caatcgaaagggcgccatgcaaccacaggtgctggggccatccttcaacaaagcaggcaa
tggcaacgagagctggacaggctcaaggacattccccgcggcactcccccgcatgagacc
tgggacttgatggctggagtgctggtggcgaaagcctttcccgaatggctggctcgcgca
cgcgaccaacgccctgggcagttcctgctgaggcaaggacgaggagcaaccctcccagac
cacgatcccttgcaccatgccgaagcgctcgctgtggcccaactcgatctcagtggtcgt
gacgcccgcatccgccttgccgtgcccatgcccagaagctggcttgaaaaccttgctgaa
tccgagggtcagtggcgggaagacgtcgattgggacgaccggcaacagaaaatccgcgct
gaacggatcctgtcgctcggcgctctcgagctgaaacgtcagccgtggcccaaaccctca
gccgaggccatcagcgcagtcttactcgaacgactccggcgcgaaggcttagcgctgttg
ccctggagtaagcgcaatgaacaactacgccgacggctgcagctggcccatctgcgcatt
ggcacaccatggccatgccgtgaaacgtcctttctccaagaccatcctgagcactggctg
atggatgccagcctggagtgccgcagctggggggagctggatgaagcgatcctgacgcag
tcgctttggggagatgttgcctggagcgatcggcgcgaacttgatgcattgctacccacg
accattcgcatccccagcgggcgcgacgcagcactcacctatgaagaggagggggtcgtt
ctcgccgtgaagcttcaagagatgtttggctgcacaaccagtcctcacctcctgaacgga
gcccttccgatcacgctggaactgctctctccggcaggccgccccctgcaacgcacaagg
gatttacaaggtttctggaacggcagctatcacgacgttcgcaaggaaatgcgcggccga
taccccaagcatccatggcccgagcgcccagccgaggcggtggcaacgcgcaaaaccaaa
aaggcctcctga
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