Synechococcus sp. WH 7803: SynWH7803_2459
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Entry
SynWH7803_2459 CDS
T00524
Name
(GenBank) Alternative RNA polymerase sigma factor, sigma-70 family
KO
K03087
RNA polymerase nonessential primary-like sigma factor
Organism
syx
Synechococcus sp. WH 7803
Brite
KEGG Orthology (KO) [BR:
syx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syx03021
]
SynWH7803_2459
Transcription machinery [BR:
syx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
SynWH7803_2459
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
HTH_AsnC-type
Sigma70_r4_2
HTH_11
HTH_10
HTH_28
HTH_23
HTH_DeoR
HTH_29
HTH_Tnp_ISL3
Fe_dep_repress
HTH_20
DUF4143
GntR
Phage_terminase
HTH_36
IF2_N
Spectrin
Rrf2
HTH_26
SelB_WH_2nd_bact
DUF1670
Motif
Other DBs
NCBI-ProteinID:
CAK24885
UniProt:
A5GPM0
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All DBs
Position
2289255..2290385
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AA seq
376 aa
AA seq
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MSEKARTTGKAPIRWSGGNDLLRLYLQDIGRVDLLTSEEEVTLSRQVQQRERLLVQERDL
STRIAAIRVLLDLEELQQREANHISHWPTRQEWARAAEMPLVELNRVLNEGYTLWAEESG
LEAKELQRRLREGRRARDRMIQANLRLVVAVAKKYQQRGMELLDLVQEGTLGLERAVEKF
DPTRGFRFSTYAYWWIRQGITRAIATQSRTIRLPVHITEKLNRIKRVQQEIASEQGRLAS
VSDLAKELGVSEDTVRQTLARVPRSVSLETRVGKDQDTQLGDLLEDGHATPEQTLTRDAL
HDDLEHLLDELNPREAEVIRSRFGLEDDTPRTLAEIGEAMALSRERVRQIETRALLKLRQ
PQRRSKVRDYIQGLDS
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgagaaggctcgaacgacggggaaagccccgatccgctggagcggcggcaacgac
ttgctgcgtctttacctccaggacatcggccgcgtcgatctgctcaccagcgaagaggaa
gtgaccctctcccgccaggttcagcagcgcgagcgtctactcgtgcaggagcgtgatctc
agcacccgcatcgccgcaatccgggtgctgctggatctcgaggaactgcaacaacgcgaa
gccaatcacatcagccactggccaacccggcaggaatgggcccgggcggccgagatgccc
ctggttgaactcaaccgagtgctgaacgaggggtacaccctctgggcggaggagagtggt
ctggaggcgaaggaactgcaacgccgcctgcgcgaaggtcgccgggcccgagaccggatg
atccaggccaatctgcgcctggtggtggccgttgccaagaaataccaacagcgcggaatg
gaactcctggatctggtgcaggagggcaccctcggactggagagagccgtggagaagttt
gatcccacccgcggctttcgcttcagcacctatgcctactggtggattcgccagggcatc
acccgggccatcgccacccaaagccgcacgatccggctgccggtacacatcaccgaaaag
ctcaaccggatcaagcgtgtccagcaggagatcgccagtgagcaggggcgtctcgcctcc
gtgagcgacctggccaaagagcttggggtcagtgaagacacggtgcgccagaccctggcc
agagtgccccgttcggtgtcgctggagacccgcgtgggcaaagaccaggacacccagctc
ggagacttgctcgaagatgggcatgcgacaccagagcagaccctcacccgagacgcgctc
cacgatgacctcgaacatctgctggatgagttgaacccgcgggaagccgaggtgatccgc
agtcgcttcggactggaagacgacacaccgcgcaccctggccgaaatcggcgaggccatg
gctctctcccgcgaacgcgtgcgtcagatcgaaacgcgcgctctgctcaaactgaggcaa
ccccagcgccgctccaaggtgcgcgactacatccaggggctggattcctga
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