Synechocystis sp. PCC 6803 GT-S: SYNGTS_0628
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Entry
SYNGTS_0628 CDS
T02098
Symbol
rnb
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
syy
Synechocystis sp. PCC 6803 GT-S
Brite
KEGG Orthology (KO) [BR:
syy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
syy03016
]
SYNGTS_0628 (rnb)
Enzymes [BR:
syy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
SYNGTS_0628 (rnb)
Transfer RNA biogenesis [BR:
syy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
SYNGTS_0628 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
BAK49376
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Position
complement(693211..695211)
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AA seq
666 aa
AA seq
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MEKGQLIEFRHQGERRLAVVDRPDGKKDWVVIDQQGQSHKLKPQRVEYEIPGGPYTVDDL
PSFLGEVDQYLDPSSLEVAWELLIEEGESITPADLALLLFSEQSPSQCYAAHALLAEDKL
YFKQKGNHYEPRPSSQIEEIKHQMRVQAQKEQEQQGFIDRVNQALAGEKVTWEGSDRLRL
EALEKFILFPEQNHRQALDILQTLGKPGRTDETQNLLIELGIWQRHENLFLRRSAYPNQF
PAKVSDVAHAYLTNPPPDPDQERFDLTTLKTYTIDDESTSEIDDGLSVETLADGGHRLWI
HVADPTRLLSPNDELDLEARKRSTSLYLPTGMISMFPPELATGPMSLLQGQRCVALSFGV
TLDEVGAVRDFTIAPSWVKPTYRLTYEDVDEMLVLKIQGEPELPLLAEAAKKRAQWRKSQ
GAITIKMPEAIIKVNADEEVQIYLQETSVSRQLVAEMMILAGEVAGRFCQEHGIPVPFRG
QPQPELPSDEELLSLPPGPVRECAVRRCMPRSEVGITPSRHASLGLDLYSQATSPIRRYT
DLITHFQMKAYLRGEPLPFSGEQVQEILYSVMPSSKEATLVERQTNRYWSLEFLRRNINE
VWQGVMLRWLREDDGLGLILLEELGLELPHRFDRPISPGDRLSLKVSNADPHRDEIRFRE
LLANEA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtggaaaaaggacaactaattgaattccggcatcaaggagaacggcggttggcggtggtc
gatcgcccggacggcaaaaaagattgggtggttattgatcaacagggccaaagccataaa
ctgaagccccagcgggtggagtatgaaattcccggcggtccctacaccgtcgatgatctg
cctagttttttaggggaagtggaccagtatctcgacccctctagtttggaggtggcctgg
gaactattgattgaagagggggaaagcatcaccccggcggatttggccctattgctattt
tctgagcaaagtcctagtcaatgctatgctgcccatgccctgctagcagaagataaactc
tatttcaaacaaaaaggcaatcattacgaaccccgccctagtagtcaaatcgaagaaatt
aaacatcaaatgcgggtgcaagcccaaaaagaacaggagcaacagggtttcattgaccgg
gtaaatcaagccctggccggggaaaaagttacctgggaagggagcgatcgcctacggttg
gaagcgttggaaaaatttatccttttccctgaacaaaatcatcgccaggctttggatatt
ctccaaacccttggtaaacctggccgtaccgacgaaacccaaaacctcctgatagaatta
ggcatctggcaacgccatgaaaatctctttttgcgtcgtagtgcttaccccaaccaattc
cccgccaaggtatccgatgtggcccatgcttacctaaccaatcctccccccgaccccgac
caagaacgcttcgatctgaccaccctaaagacctacaccatcgatgatgaaagcacttcg
gaaattgacgacggtctgagtgtggaaaccttggcggacggcggccatcggctttggatc
catgtggccgaccccacccggttgttgagtcccaacgatgaactggatttagaagcccgt
aaacgcagtaccagtctttacctgcccacgggcatgatttccatgtttccgccggagttg
gccacggggccgatgagtttactccaggggcaaagatgtgtggccttaagttttggagtg
actttggatgaggtgggggcagtgagggattttaccattgcccctagttgggttaagcct
acctatcgcctcacctacgaagatgtggatgagatgttggtgctgaaaattcaaggggaa
ccggaattgcccctcctagccgaagcagccaaaaaacgggcccaatggcgtaaatcccag
ggggctatcaccatcaaaatgcccgaagccattattaaagttaatgccgacgaggaagtg
caaatttatctccaggaaacctccgtttctcgtcaactggtggcggaaatgatgatcttg
gccggggaggtggcggggcgtttttgccaagagcatggcatcccagtccccttccggggc
caaccccagccggagttaccctccgatgaagagttgttgtctttaccgccgggccctgtg
cgggaatgtgcggtacgccgttgtatgccccgtagtgaagtgggcattacccccagtcgc
catgctagtttggggctggatttgtattcccaggccacctcccctatccgtcgttacact
gatctgattacccattttcaaatgaaggcctacctacggggggagccgttgcctttctct
ggggagcaggtacaagaaattctatacagcgttatgccctcttccaaggaagctacgttg
gtggaacggcaaactaaccgttactggagcttggagtttctgcggcgcaatattaatgag
gtgtggcagggggtgatgctccgttggttgcgggaggatgatggcttgggtttaattctt
cttgaagaactaggtcttgaattgccccatcgctttgaccgtcccatttcccccggcgat
cgcctaagcctaaaggttagtaatgccgacccccatcgagacgaaattcgcttccgggaa
ttgttggccaatgaagcctag
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