Synechocystis sp. PCC 6803 GT-S: SYNGTS_0790
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Entry
SYNGTS_0790 CDS
T02098
Symbol
rpoC2
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
syy
Synechocystis sp. PCC 6803 GT-S
Pathway
syy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
syy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SYNGTS_0790 (rpoC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
syy03021
]
SYNGTS_0790 (rpoC2)
03400 DNA repair and recombination proteins [BR:
syy03400
]
SYNGTS_0790 (rpoC2)
Enzymes [BR:
syy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SYNGTS_0790 (rpoC2)
Transcription machinery [BR:
syy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SYNGTS_0790 (rpoC2)
DNA repair and recombination proteins [BR:
syy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SYNGTS_0790 (rpoC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BAK49538
LinkDB
All DBs
Position
complement(853497..857450)
Genome browser
AA seq
1317 aa
AA seq
DB search
MTFYNYTIDKGRLKKLIALAYRRYGSARCSQLADELKELGFRFATKAGVSISVDDLTIPP
EKKQMLEAAEKEIRTTEERYARGEITEVERFQKVIDTWNGTSEELKDQVVVNFRKTDPLN
SVYMMAFSGARGNMSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYVISSYGAR
KGLVDTALRTADSGYLTRRLVDVSQDVIVREQDCGTERSLRVTAMTDGDQVKISLADRLF
GRLLAKDVVGPDGEIIAKRNDEIDEALANRIAAVTDEVYVRSPLTCEAARSVCQNCYGWS
LAHGHKVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQEKAPEDGTVKWGKG
LSTRKVRTRHGEDAEQVEIAGDLIWKGEGKKAATQTYSLTPGSLLFVQDGQTVTAGQLMT
EISLSKTQRSTERATKDVAGDLAGEVLFDRLVPEEKTDRQGNTTRIAQRGGLVWILSGEV
YNLPPGAEPVVKNDEQVEVGSIMAETKLVTNDGGVVRLVSNREIEIITASVLLDQAQVKL
ESSGGREQYVIYTADKQRFLLKAAPGTKVQNHSIVAELIDDRYRTTTGGMIRYAGVEVAK
GGRKQGYEVTKGGTLLWIPEETHEINKDISLLIVEDGQYVEAGTEVVKDIFCQSSGIVEV
VQKNDILREIIIKPGDFYQDVDPGSVKIESGQLLQPGQDVFPGVTVSTLSQAEWIESPEG
NGLLLRPVEEYKVFDEPAAPSQGSQNEEGGRQIELRSVQRLFYKDGDRVKSVEGAPLLST
QLVLEIYGSGNEGISHLSADIELQDDEEEDCQRLQLVILESLVLRRDQESDPLGGASKTR
LLVQDGDQIPPGAVVARTEIQCKEAGTVRGIKEGQESIRRVLLERAADRLVVDLPSAPEV
KPGQLLVAGQELVPGVKLEESGKVLEINGKGDNYQLVLRRARPYRVSPGAVLHIEDGDLV
QRGDNLVLLVFERAKTGDIVQGLPRIEELLEARKPKEACVLARAPGVCQVEYLEDESVDI
KVVEDDGTVSEYPLLPGQNAMVTDGQRIDVGHALTDGYNNPHEILDVFFSYYVDKDGCYQ
AALRGLQAAQKFLVNEVQTVYQSQGVDISDKHIEVIVRQMTAKVRIDDGGDTTMLPGELV
ELRQVEQVNEAMGITGSAPARYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK
SDWLRGLKENVIIGRLIPAGTGFSSHEEVLGLIETQDDIQGYMIEPIELPTTKKKASATK
VKTKKVEADDDLLDDTRARAYAGTQLSQDDEEFEETYDTDEDDFDMDDDDDFGDDED
NT seq
3954 nt
NT seq
+upstream
nt +downstream
nt
atgacgttttataactacaccatcgacaaaggccgcctgaaaaaactcattgcccttgcc
taccgtcgttacggttctgcccgctgttcacagttggctgatgaactgaaggaactgggg
tttcgttttgccaccaaagcgggggtttccattagtgtagatgacctaactattcctcca
gagaaaaagcaaatgctggaggcggcggaaaaggaaattcgcaccacggaggaacgctat
gctcggggggaaatcaccgaggtagaacggttccaaaaggtaattgatacctggaacggt
acttcggaggagttgaaggatcaggtggtggttaacttccgcaaaaccgatcctctcaac
tccgtctatatgatggctttctccggtgcccgggggaacatgagccaggtgcggcaattg
gtggggatgcggggcttgatggcggatccccagggggaaattatcgacttgcccattaaa
accaatttccgggaaggactgacggttactgagtatgtaatttcttcctatggtgcccgc
aagggtctggtggacacggctctgcggacggcggattctggttacctcacccggcgtttg
gtggacgtttcccaggacgtaattgtgcgggaacaggattgtggcaccgagcgcagtcta
cgggtcaccgccatgaccgatggggaccaggtaaaaatcagcttggccgatcgcctgttt
ggtcgtttgctggctaaggatgtggtgggcccggacggagaaattattgccaaacggaac
gatgaaattgacgaagccttggcaaaccgcattgccgccgtcaccgatgaggtttatgta
cgatcgccgttgacctgtgaagcggcccggtccgtgtgccaaaactgctacggctggagc
ttggcccatggtcacaaagttgacctaggggaagcggtaggcattatcgccgcccaatcg
atcggggaacccggcacccagttgaccatgcggactttccacactgggggggtattcacc
ggggaagtggcccgccaagagaaagcgcccgaagacggcaccgtcaaatggggtaaaggt
ttaagcacccgtaaagtccgtacccgccacggggaagatgcggagcaggtggaaattgcc
ggggatttaatctggaaaggggaaggcaaaaaagctgccacccaaacctactccctcacc
cccggttccctactgtttgtgcaggatggacagacggtgacagcggggcagttgatgacg
gaaatttccctctccaaaacccaacgttccacggagcgggccaccaaggacgtagctggg
gatctggccggagaagtgctgttcgatcgcctggtgccggaggaaaaaactgaccgtcag
gggaacaccacccgcatcgcccaacggggtggtctagtctggatcctttccggggaagta
tataacttaccgcctggggcagaacccgtggtgaaaaatgacgagcaggtggaagtaggc
agcatcatggccgaaaccaagctggtcaccaacgacggtggggtggtgcgccttgtgagt
aaccgggaaattgaaatcatcaccgcctctgtgctgttagatcaagcccaggtcaagctg
gaaagtagtggcggccgggaacaatacgttatctacacggccgataagcaacgcttcctg
ctcaaagccgctcccggtaccaaagtgcagaaccacagcattgtggcggaattaatcgac
gaccgttaccgtaccaccaccgggggcatgattcgctatgccggcgtggaagtggctaag
ggcggccgcaaacaaggctatgaagtcactaaagggggtaccctgctctggattcccgaa
gaaacccacgaaattaacaaagatatttccctgttaattgtggaagatggccagtatgtg
gaagcgggcacggaagtggtcaaggacattttctgccaatccagcggcatcgttgaagtg
gtgcagaaaaacgatattctgcgggaaattattatcaaacccggtgacttctaccaagat
gtggaccccggttcggtgaaaattgaaagcggccagttgctgcaaccagggcaggatgtt
ttccccggtgttaccgttagcaccctcagccaggccgaatggattgaaagtcccgaaggc
aatggtttgctgctacgccccgtggaagagtacaaagtatttgatgagcccgccgccccc
tcccagggttcccaaaacgaagaagggggccgccagattgaattgcgctcagtgcaacgt
ctattctataaagacggcgatcgggttaaatccgtcgaaggggcccccctgctcagcacc
caattggtgttggaaatttatggcagtggtaacgaaggtatttcccacctttccgccgat
attgaactccaggacgacgaagaggaagattgccagcgcttacagttggtgattttagaa
tctttggtactacgccgggaccaggaatccgatcccctcggcggagcctccaaaacccgc
ttactggtgcaagatggcgaccaaattccccccggagcggtggtggctcgtaccgaaatt
caatgtaaggaagcgggcactgtgcggggtatcaaggaaggacaggaatccatccgccgg
gtgttactggaacgggcagcagatcgcctggtggtggatctgccaagtgccccggaagtc
aaaccaggacaactcttggtggcagggcaggaattggtgcccggggtcaaactggaggag
tccggcaaagtcctggaaatcaacggcaaaggggacaactatcagttagtgttacgccga
gcccgaccctatcgggtttcccctggggcagtgctccacatcgaagacggcgacctggtg
caacggggggataacctcgtgctgctggtgtttgagcgggctaaaaccggggatatcgtc
cagggtttaccccggattgaagaactgttggaagcccgtaaacctaaagaagcctgcgtc
ctggcccgggcccctggggtctgtcaggtggaatacctggaagatgagagtgtcgacatc
aaagtggtggaagacgacggcaccgtgagcgaatatcccctgttaccgggacaaaacgcc
atggtcaccgacggacaacgcattgacgtaggccacgccctcaccgatggctacaacaat
ccccacgaaattttggatgtgttcttcagctactacgtggacaaggacggttgttaccaa
gcggccctgagaggactgcaagcggcgcaaaaattcctcgtcaatgaagtgcaaacggtt
tatcaatcccaaggggtggatatttctgacaaacacattgaggtaattgtgcggcagatg
accgccaaagtccgcattgatgatgggggagacaccaccatgctcccaggggaattggtg
gaattacgccaagtggaacaggttaatgaagccatgggcatcactggtagtgctccggcc
cgctatactcctgtattgcttggtatcaccaaagcttctttgaataccgatagtttcatc
agtgcggcttccttccaagaaaccactcgggtgcttaccgaagcggcaatcgaaggcaag
tccgattggttacggggcctgaaggagaacgtgatcattggtcgtcttattcctgcgggt
actggcttcagtagccatgaggaagtgttgggattgattgaaacccaggacgatattcaa
ggctatatgattgagccaattgaattaccaacgacgaagaaaaaggctagcgccaccaag
gtgaaaactaaaaaagttgaagccgatgacgaccttttggacgacactagggcccgggcc
tatgccggcactcaactcagtcaggatgacgaagagtttgaagaaacctacgacaccgat
gaggatgatttcgatatggatgacgatgacgattttggggatgatgaggattaa
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