Synechocystis sp. PCC 6803: MYO_124570
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Entry
MYO_124570 CDS
T02468
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
syz
Synechocystis sp. PCC 6803
Pathway
syz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
syz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MYO_124570 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
syz03400
]
MYO_124570 (mfd)
Enzymes [BR:
syz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYO_124570 (mfd)
DNA repair and recombination proteins [BR:
syz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MYO_124570 (mfd)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
AAA_22
Motif
Other DBs
NCBI-GeneID:
14617879
NCBI-ProteinID:
AGF52687
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Position
complement(2699199..2702798)
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AA seq
1199 aa
AA seq
DB search
MAEPRAVLKQGNRNRDKDSVGLGNRLRFVSISSALNPMTFSSILRHLQTLPLSKDLREKL
QKRGHVQLSGLPRLPKGLIVSSLAQSLEKNLLVITATLEEAGRWTAQLELMGWQTVNFYP
TSEASPYDPGRLESEMVWGQMQVLAELIQGHQVKGKAIVATEKALQPHLPPVATLREYCL
ALRRGQEMDSKSLELTLARLGYERGSTVETEGQWSRRGDIVDIFPVSAELPVRLEWFGDE
LEKIREFDPASQRSLDDLTGLVLTPTSFDQVIEPALNAQAIDLSAWGEDAETEQLFGKEG
LQRFLGLAFTEPACLLDYLPTETVCVLDEPEQCAAHSERWFEAVAQDWSALQLPNLPQLH
RNFSALGDRLKTDFQYITLSEIHEANGDSLDISARPIPTMPHQFAKLAEILRGKREIYSG
LTLGQYSTWLISAQPSRTVSLLQEHDCAVQFIANPRDYPAIEKSQIQRTAVTLKYSGLAE
LEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRRATSKQVDINKLSPGDYVVHKSHGI
GKFLKLDALANREYLMIQYADGILRVPADSLDSLSRFRHTGTRPPELHKMGGKVWEATKN
KVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPWQQELEDSFPYQPTPDQLKAVQDVKRD
LEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPTTVLTQQHYHTLKERFA
PYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRF
GVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYN
PEVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQMVPSARIAIGHGQMEESELESTM
LAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWL
LYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEF
YMEMLQDAIKEIQGQEIPKVEDTQIDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTDEL
PKIALDWGDRYGMLPSPVEELFKVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEPAWKL
LAENLPNHLQSRFVYSAKKVVVRGLGVLAPAKQMDNLIDWFGKMQGALPETKMETLVGK
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggctgagcctagggctgtcctcaaacagggcaatcggaatagggacaaggattctgtc
gggctggggaacaggctaagatttgttagtatctcctctgctctgaacccaatgaccttt
tcctccatactccgccatctgcaaaccttaccgttgagcaaagacctgcgggaaaaattg
caaaagcggggccatgtgcaactcagtggcctaccccggttacccaaaggcctaatcgtt
tccagtttggcccagtccctggagaaaaatcttttggtcatcactgccacgttggaggaa
gcggggcgctggacagcccagttggaactgatgggttggcaaaccgttaatttttacccc
acttctgaagcttccccctatgaccctgggcgactagagtcggaaatggtttggggacaa
atgcaggtgttggcagaattaatccagggccatcaggttaagggcaaggcgatcgtcgct
acagaaaaggccctacagccccatttacccccggtggcaaccttacgggaatactgtttg
gccctacgacgcggtcaggagatggatagcaaaagtctggagcttaccctagcgaggttg
ggctacgagcgtggcagtacggtggaaacagaggggcaatggagtcggcggggggatatt
gttgatattttcccagtgtcggcggagctaccggtgcggctggaatggtttggtgatgag
ttggaaaaaatccgggagtttgatcctgctagccagcgttccttggatgacttaactggt
ttggtgctgacccccaccagttttgatcaggtgatcgaaccggcgttaaatgcccaggcc
attgatctctctgcttggggagaagatgcggaaacggagcaattattcggcaaagaggga
ttacagcgatttttgggtctcgcctttactgaaccggcttgtttattagattatttaccg
acagaaacagtctgtgtactggatgaaccagagcaatgtgcggcccacagtgaacggtgg
tttgaggcggtggcccaggattggtcagctttgcagttaccgaatttaccccaattacat
cgaaatttttcggcccttggcgatcgcctaaaaacagattttcaatacattaccctgtca
gaaatccacgaagcgaatggggatagtttagatatttcagctcgacccatccccaccatg
ccccaccagtttgctaagttggcagaaattttacgggggaaacgggaaatttatagcggt
ttgacgttgggacaatacagcacttggttgatttcagcccagcccagtcgtactgtttct
ttgttgcaggaacatgattgtgcggtgcaatttattgccaatccgagggattatcctgcc
attgaaaaaagtcagattcaacggacagcggtgacgttaaagtattcaggattagcggaa
ttagaagggtttatcttaccgacctttcgtttagttttagtcacggatcgagaattattt
ggtcagcatgctttagctacaccggaatatgtgcggaaacggcgacgggctacgtctaaa
caagttgacattaataaactttcccctggggattatgtagtccacaaaagtcatggcatt
ggcaaatttttgaagttggatgcgttggctaatcgggaatatttaatgatccaatatgcc
gacggcattttgcgggtgcccgccgatagtttggacagtttatcccgctttcgccatacg
ggaactagacctcccgaactgcataaaatgggcggtaaagtgtgggaagccaccaaaaat
aaagtccgcaaagcagttaaaaaattggccgttgatttgctcaatctttatgctaagcgg
gcaaaacaggtgggttatgcctatccgccggatagtccctggcaacaggaattggaagat
tctttcccctaccaacccacccccgatcaactaaaagcagtacaggatgtgaaaagggat
ttggaaggagatcgcccgatggatagattagtgtgtggggatgtgggctttggcaaaaca
gaagtggcggtgcgggccatttttaaggccgtgaccagtggcaataaacaggtggcttta
ctagctcccaccacggtgttaacccaacagcattaccacacccttaaagaaagatttgct
ccctatcccatcaccattggtttactgaatcgttttcgcactgcttcggagaaaaaggag
attttagccaagttaaaaagtggtgaattagatattgtggtaggtacccaacaggtatta
ggtacatcggtaaaatttaaagatttaggacttttagttattgacgaagaacagcgcttt
ggtgttaaccaaaaggaaaaaattaagaccctgaaaacggaagtagatgtattaacccta
acggcaactcccattccccgtaccctttatatgtccctttccggcattcgggaaatgagt
ctgattaccacaccgccaccttcccgtcgccccattaaaacccatttatctccctacaat
cccgaagtaattcgcaccgccattcgtaacgagctagaccggggtgggcaggttttttat
gtcgtgcctcgcattgaaggtattgaggaattgggaggacaactgcgacaaatggtgccc
agtgctcgcattgccattggtcatggtcaaatggaggaatctgagttggaaagtactatg
ttagctttcaatgatggtgaggcggacattttagtttgtactactatcatcgaagctggt
ttggatattcccagggtaaacacaattattgttgaagatgcccaaaaatttggcttggcc
caactttatcaactgcggggtcgggtagggcgatcgggtattcaagcccatgcttggttg
ctctatcctaaccaaaaacagttaacggaaaaagctagattaagactgcgggcattgcaa
gaattcagccaacttggttccggttatcaactggccactagggatatggaaattcggggc
gtaggtaatcttttgggtgcagaacaatcggggcaaatggaggcgatcggttatgagttt
tatatggagatgttgcaagatgccattaaagaaatccagggtcaggaaattcccaaagtg
gaagatacccaaatagatttacctctcactgcctttattcccagcgactacattcccgat
ttagaagaaaaaatggccgcctatcgtcgcattactagcattgaatccactgatgagttg
ccgaaaattgccttggattggggcgatcggtatggtatgttaccaagtccggtggaggaa
ttatttaaagtggttaagctcaagcatttagccaaatccttaggcttttctcgcattaaa
gtggagggtaaacaaaatcttgtcttggaaacgcccatggaggaacccgcttggaaatta
ttagcggaaaatttacccaatcatctccagtcccgctttgtttacagtgccaaaaaagtg
gtggtgcggggtttaggagtgttggccccagctaagcaaatggataatttaattgactgg
tttggcaagatgcaaggggctttaccagaaacaaaaatggaaactttagtgggtaaatag
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