KEGG   Siansivirga zeaxanthinifaciens: AW14_00580
Entry
AW14_00580        CDS       T03699                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sze  Siansivirga zeaxanthinifaciens
Pathway
sze03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sze00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    AW14_00580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sze03021]
    AW14_00580
   03400 DNA repair and recombination proteins [BR:sze03400]
    AW14_00580
Enzymes [BR:sze01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     AW14_00580
Transcription machinery [BR:sze03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     AW14_00580
DNA repair and recombination proteins [BR:sze03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      AW14_00580
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RPOC_hybrid
Other DBs
NCBI-ProteinID: AJR02355
UniProt: A0A0C5WI34
LinkDB
Position
complement(126929..131233)
AA seq 1434 aa
MARKQDKNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGNAKNEEGEPLQKMDFLTEEEYLNILESLPQENQY
LDDTDPNKFLAKMGAECLIDLLARIDLESLSYELRHKANTETSKQRKTEALKRLQVVESL
RESNNNRENRPEWMIMKVIPIIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQESVDSLFDNTRKSSAVKTDSNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPELKLYECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIIDK
REPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLVCTAFNADFDG
DQMAVHLPLGPEAILECQLLMLASHNILNPANGSPVTVPSQDMVLGLYYMTKLRKSTPEA
PVKGEGLTFYAPEEVEIAFNEKRVDLNAGIKVRTLDINEDGKLAPTIIETTVGRVLFNQH
VPQAAGYINQVLTKKSLRDIIGDILKYTSVPETADFLDAIRTLGFKFAFQGGLSFSLGDI
IIPPEKQGMIDKANTLVDGIMGNYNMGLITNNERYNQVIDIWTSTNAELTELSMKRIRED
QQGFNSVFMMLDSGARGSKEQIRQLTGMRGLMAKPKKSNAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINTEDCGTLRGVEVEPLKKND
EVVETLQERIVGRVSLNDVYNPLTDELLVASGQLIEDDIAEAIEASPIESVEVRSALTCE
ALQGICSKCYGRNLATGKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEENK
LVVKFTGIAEIEDLKTVKGVDNEGNESDIVISRTTELKLIDKKTGITLSTNNIPYGSTLL
IKNGDELKPGDVVCTWDPYNGVIISEFSGKIKYENIEQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLHIEDTKGEVIRSYNLPVGSHLMINDGEKINVGKILVKIPRKSAKAGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIVESKLGEVKKYLVKLSNQILV
QENDYVKAGMPLSDGSITPNDILNIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIIDSGDTLFLEDQLVHKADFILENDEIFGMKVIEDAGDSSRLKAGQIITPREL
RDENSILRREDKALVVARDARPATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
AGKVDDLEGLKENVIVGHRIPAGTGMRKYDNIIVGSKEEFDEMMQVKKQELNYN
NT seq 4305 nt   +upstreamnt  +downstreamnt
atggcaagaaaacaagataagaatacagtaaagagatttaacaaaatctccatcggttta
gcttcaccagagtctattttagcagagtctagaggtgaggttttaaaaccagaaactatc
aattatcgaactcataaaccagaaagagatggtttattctgtgagcgtatttttggacct
gtaaaggactacgaatgtgcttgtggtaaatataaaagaattcgctacaaaggtatcgta
tgtgaccgttgtggtgtagaagtaacagaaaagaaagtacgtagagacagagttggtcac
attaatttagtggtgcctgttgctcatatctggtacttccgttctttaccaaacaaaata
ggatatttattaggattaccttctaagaaattagatatgattatttactacgaacgttac
gtagtaattcaaccaggtaatgctaaaaacgaagaaggtgagccattacaaaaaatggac
ttcttaacagaagaagaatatttaaatattcttgaatcgcttcctcaagaaaatcaatat
ttagatgatacagatccaaacaagttccttgctaaaatgggagcagaatgtttaatcgat
ttattagctagaattgatttagagtctttatcatacgaactacgtcataaagcaaacact
gaaacgtctaaacaacgtaaaacagaagctttaaaacgtttacaagttgtagaatcttta
agagaatctaacaataatcgtgagaacagaccagagtggatgattatgaaggtaattcca
atcatcccgccagaattacgtcctttagtgccgttagatggtggtcgttttgcaacgtct
gatttaaatgatttatacagaagagttattatacgtaataaccgtctgaagcgtttagtt
gaaattaaagcccctgaagtaattttacgtaacgaaaaacgtatgttacaggaatctgta
gattcgttattcgataatacacgtaaatcttcagcagttaaaacagattctaacagacca
ttaaaatcgttatcagattcattaaaaggtaaacaaggtcgtttccgtcaaaacttactt
ggtaaacgtgttgattattctgcacgttcggtaattgttgttggaccagaattaaaacta
tacgagtgtggtttaccaaaaaatatggctgcagagctttacaaaccttttgtaattaga
aaattaattgaaagaggtattgttaaaactgtaaaatcggctaagaaaattatagataaa
agagagcctgtggtttgggatatcttggaaaacgttcttaaaggacatccagtattacta
aaccgtgctcctacgttacacagattgggtattcaagcgtttcaacctaaattaattgaa
ggtaaagcgattcaattacacccattagtttgtacggcgtttaacgcggatttcgatggt
gaccaaatggcggttcatttaccattaggcccagaggctattttagaatgtcaattatta
atgttggcttctcacaatatcttaaatcctgcgaatggttctccggtaacggttccttct
caagacatggtacttggtttatactacatgactaagttacgtaagtctacaccagaagct
cctgttaaaggtgaaggtttaacattctatgcaccagaggaagtagaaattgcgttcaat
gaaaaacgtgtagatttaaatgctggtattaaagtaagaactttagatattaacgaagat
ggtaagttagctccaactattattgaaacaacagttgggcgtgtattatttaaccaacat
gtgcctcaagcagctggttatataaatcaagtacttactaaaaaatctttgagagatatt
attggagatattttaaaatatacttcagttcctgaaactgcagatttcttagatgctatt
agaaccttaggtttcaaatttgcattccaaggtggtttgtcatttagtttaggagatatt
atcattccaccagaaaaacaaggaatgattgataaagcgaataccttagttgatggtatt
atgggtaactataacatgggacttattaccaacaacgaacgttataaccaggttattgat
atttggacttctacaaatgctgaattgactgaattgtctatgaagcgtattcgcgaggac
caacaaggtttcaactcggtatttatgatgcttgattctggagctcgtggatctaaagaa
cagattcgtcagcttacaggtatgcgtggattaatggcgaaacctaaaaaatcgaatgca
ggtggtggtgaaattattgaaaatccaattctttctaactttaaagaaggtctttcaatt
ttagaatattttatctcaactcacggtgctcgtaaaggtcttgcagatacggctcttaaa
acagccgatgctggttacttaacacgtcgtttagtagacgtttctcaagatgttattatt
aacacagaagattgtggaacattacgtggcgtagaggtagaaccattaaagaaaaatgat
gaagtggttgaaacacttcaagaacgtattgttggtcgtgtttctctaaatgatgtttac
aatccattaaccgatgaattgttagtagcttcaggtcaattaattgaagatgatatagct
gaagctatcgaagcttctccaattgaaagtgtagaagtacgttctgctttaacatgtgaa
gctttacaaggaatttgttctaaatgttatggtcgtaacctagctaccggtaaaatggta
caacgtggcgaagctgttggtgttgttgctgcccaatctattggtgagcctggtacacag
ttaacacttcgtacgttccacgtaggtggtattgctggtaacatttcagaagaaaataaa
ttagttgttaagtttacaggtattgccgaaatcgaagatcttaaaactgtaaaaggtgta
gataacgaaggaaacgaaagtgatattgttatctctcgtactacagagcttaaattaatc
gataagaaaacaggtattactttaagtactaataacattccttacggttcgacattatta
attaaaaatggtgacgaattaaaaccaggtgatgtagtttgtacttgggatccatacaac
ggtgtaattatatctgaattctcaggtaaaattaaatatgagaatatcgaacaaggtatt
acttaccaagttgaaatcgatgagcaaacaggtttccaagaaaaagtaatttctgaatct
agaaacaaaaagcttataccaacgcttcatattgaagatactaaaggtgaagtcattaga
tcttacaacttaccagtaggttctcacttaatgattaatgatggtgagaaaattaatgta
ggtaagattttagttaaaatacctcgtaaatctgcaaaagcaggagatattacaggtggt
ttacctcgtgtaacagagttatttgaagcacgtaacccatcgaacccagcagttgtaagt
gaaatagatggtgtggtatcatttggtaaaattaaacgtggtaaccgcgagattatagta
gagtctaaattaggtgaagttaagaagtacttagttaaattatctaatcaaattcttgtt
caagagaatgattacgttaaagcgggtatgcctttatctgatggatctattactccaaac
gatattttaaatatcaaaggtccttctgcagttcaacaatatttagtaaacgaagttcaa
gaggtttaccgattacaaggtgtgaaaattaacgataagcactttgaggttgttgtaaga
caaatgatgcgtaaagttagaattattgattctggtgatacattattccttgaagatcaa
ttagtacataaagcagattttattttagaaaatgatgaaatcttcggaatgaaagtaatt
gaagacgcaggtgattcgtctagacttaaagctggacaaataattacaccacgtgaactt
agagatgaaaattcaattctaagaagagaggataaggcgcttgtagtagctagagatgct
agacctgcaacggcgactccaatcttacaaggtattactagagcgtcacttcaaacgaaa
tcgtttatatcggcagcatctttccaagaaacgactaaagtacttaacgaagcagctgta
gctggtaaagttgacgatttagaaggattaaaagaaaatgtaattgtaggacatagaatt
cctgcaggtacaggtatgcgtaaatacgataacattattgttggttctaaagaagaattc
gacgaaatgatgcaagtaaaaaagcaagaattaaattataattaa

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