Siansivirga zeaxanthinifaciens: AW14_03960
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Entry
AW14_03960 CDS
T03699
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
sze
Siansivirga zeaxanthinifaciens
Pathway
sze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW14_03960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sze03019
]
AW14_03960
03016 Transfer RNA biogenesis [BR:
sze03016
]
AW14_03960
Enzymes [BR:
sze01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AW14_03960
Messenger RNA biogenesis [BR:
sze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AW14_03960
Transfer RNA biogenesis [BR:
sze03016
]
Prokaryotic type
tRNA degradation factors
AW14_03960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
OB_RNR_1st
CSD
Motif
Other DBs
NCBI-ProteinID:
AJR02920
UniProt:
A0A0C5WJJ3
LinkDB
All DBs
Position
complement(854277..856466)
Genome browser
AA seq
729 aa
AA seq
DB search
MTRKKKGKSKKGISNLSNTILSILKKDRNQAYNYKQIAAKLDVNDASSRNQIIKKLADLA
GKKEIEEVERGKFKAVITTEYHVGKLDFAAKSNGYVICEDFDDDVFIASNNINKALNGDE
VEFYVYKRRHRGKLEGEITQVLKREKSEYVGVIQLHDKYAFVIADSNKMYKDIFIPINKT
FNAEDGDKVLVRLEDWPEKADSPYGKVIQVLGKPGDHNTEIHAILAEYGLPHEFPHEVEA
FANKLDTSITKEEIAKRRDMRGDLTFTIDPKDAKDFDDALSFKVIKKGLYEIGIHIADVS
HYLQEGTVLDDEAYERATSIYLVDRVVPMLPEVLSNNACSLRPNEEKLTFSAVFQINDKA
EIKNEWFGRTVTYSDARFAYEEAQAIIESKTNVIPADVSLTGEAYSTSQDIADAILKMDD
LAKIMRAKRMSSGAISFDKVEVKFDLDEHANPVGVFFKTSKDANKLIEEFMLLANRKVSE
FVGKKSPKKTFVYRVHDEPDDSKLANLQGIVSKFGYKLNFKDRKTTSASLNYLLKEVNGK
KEQNLVDTLAIRSMSKAEYSTHNIGHYGLAFDYYSHFTSPIRRYPDVMAHRLLQHYLDGG
KSANEEVYEEKCNHSSNMENLATKAERDSIKYMQIKFMQDHKDEDFVGVISGVTDWGIYV
EIISNKCEGMVSVRDMKDDHYAFDQDLYAMVGRNTKMMYQLGDEVIVKVKNTDLVKKHLD
FTLIGKYEG
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaagaaaaaaggaaaatctaaaaaaggaatttccaacctatcaaataccatc
ttaagtattttaaaaaaagacagaaatcaagcctacaattataaacaaattgctgctaaa
ttagacgttaatgatgccagtagcagaaatcaaattataaaaaaattagccgatttagct
ggtaaaaaagagatagaagaagtagaacgcggcaaatttaaagctgtaataaccaccgaa
taccatgttggaaagctcgattttgctgctaaaagtaacggttacgttatttgtgaagat
tttgatgatgatgtttttatagcctcaaataatataaataaagccttaaatggcgatgaa
gtagaattttatgtttacaaacgtcgtcatcgcggtaaattagaaggtgaaattacccag
gttttaaaacgcgaaaaaagcgaatatgtaggtgttattcagttacacgataaatacgct
tttgttattgcagatagcaataaaatgtataaagatatttttattcccataaataaaacc
tttaatgcagaagatggtgataaagttttggttcgattagaagattggccagaaaaagcc
gattcaccttacggaaaagtgattcaagttctagggaaaccaggagatcataacaccgaa
atacatgctattttagccgaatacggcttacctcacgaatttcctcacgaggttgaagcc
tttgctaataaattagatacttctattactaaagaagaaattgctaaacgccgcgatatg
cgtggagatttaactttcaccatcgatccaaaagatgccaaagatttcgatgatgcttta
tcctttaaagtaattaaaaaagggttatatgaaataggtattcatatcgccgatgtatcg
cattatttacaagaaggtactgttttagatgatgaagcttacgaacgagcaacttctatt
tatttggtagatagagtagtacctatgttgccagaggttttatctaataatgcctgttct
ttaagacccaacgaagaaaaactaactttttcggcggtatttcaaataaacgataaagcc
gaaattaaaaacgaatggtttggaagaacagtaacgtacagtgatgcacgttttgcttac
gaagaagctcaagcaattatagaatctaaaaccaatgtaattcctgccgatgtttcgtta
acaggcgaagcttattcaacgtctcaagatattgccgatgctattttaaaaatggatgat
cttgctaaaattatgcgtgctaaacgtatgagttctggagctatttcttttgataaagtt
gaagtgaaatttgatttagacgagcatgcaaatcctgtaggtgtattttttaaaaccagt
aaagatgctaacaaattaattgaagaatttatgttgttagccaaccgaaaagtatcggaa
tttgttggtaaaaagagtcctaaaaaaacctttgtgtatcgtgtgcacgacgaaccagac
gatagtaaattggctaatttacaaggtattgtatctaaatttggttataaacttaatttt
aaagatcgaaaaacaacttcagcttcgcttaattatttattaaaagaagttaatggtaaa
aaagaacaaaatttagtcgatactttagctattagaagtatgagtaaagccgaatattct
acccataatattggtcattacggtttagctttcgattattacagtcatttcacatcacct
atacgtcgttatcccgatgttatggcacatcgtttattacaacactatttagatggtgga
aaatctgctaacgaagaggtttacgaagagaaatgtaaccactctagtaatatggaaaat
ctggccacaaaagcagaacgcgactctataaaatacatgcaaattaagtttatgcaagat
cataaagatgaagattttgtaggcgtaatttctggtgttaccgattggggaatttatgta
gaaattatttcaaataaatgtgaaggtatggtaagtgtgcgcgacatgaaagacgatcat
tatgcattcgatcaagatttgtacgccatggtaggaagaaatactaaaatgatgtatcaa
cttggtgacgaagttatagtaaaagttaaaaacaccgatttagttaaaaaacatctcgat
tttacccttattggtaaatatgaaggttaa
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