Siansivirga zeaxanthinifaciens: AW14_04835
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Entry
AW14_04835 CDS
T03699
Name
(GenBank) recombinase RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
sze
Siansivirga zeaxanthinifaciens
Pathway
sze03410
Base excision repair
sze03430
Mismatch repair
sze03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
sze00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AW14_04835
03430 Mismatch repair
AW14_04835
03440 Homologous recombination
AW14_04835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sze03400
]
AW14_04835
DNA repair and recombination proteins [BR:
sze03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AW14_04835
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AW14_04835
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AW14_04835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DSPc
SHOCT-like_DUF2089-C
Motif
Other DBs
NCBI-ProteinID:
AJR03059
UniProt:
A0A0C5WCM1
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Position
complement(1042176..1043864)
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AA seq
562 aa
AA seq
DB search
MRWTLKPKPEPSKVKALKEALNVDDITANLLLQRGIESFDDAKNFFRPSLEHLHDPYLMK
DMDKAVSRIEAAFANNENILVYGDYDVDGTTSVALMSSYLKTRTPQVATYIPDRYDEGYG
VSFKGIDFASDNDFSLIIALDCGIKALDKVAYAKEKNIDFIICDHHRPGDTIPDAVAVLD
AKQSDCNYPYKELCGCGVGFKLIQALASNEGKTVEDLTEYLDLVATAIGADIVPITGENR
VLAYYGLQVVNSNPRPGIKAILEQVNKNEFTITDVVFIVAPRINAAGRMKHGNYAVTLLT
ETNEDLAKKYAAEINDYNLDRRETDKLITEEALQLIEKLNEKDRLTTVVYQENWHKGVIG
IVASRLTETYYRPTLVFTKSGDKLAASARSVVGFDVYNALEACSEHIEQFGGHKYAAGLT
LKEENYEAFKQAFEDVVSKTIEPRLLVPEIKIDAQINLEDITPKFYRILKQFAPFGPGNM
MPVFMTENLKDTGYGKCVGEDDKHLRVTVKQDNNISFVGIGFGLGDKLDVIKNRATFSAV
YSIDENEWQGAVFLQLKLRDIK
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgttggacacttaaaccaaaacccgaaccttcaaaagttaaagccctaaaagaggct
ctaaatgtagatgatattacggctaatttactgttacaacgtggtatcgaatcttttgat
gatgccaaaaattttttcaggcccagcctggaacatctgcatgatccgtatttaatgaaa
gatatggataaagctgtttctagaattgaagcggcttttgcaaacaacgaaaacattttg
gtttatggcgattatgatgtcgatggaaccacttctgtagcgctcatgagttcgtatctt
aaaacccgtacgccacaggtggcaacatacattcccgatagatacgacgagggttatggc
gtttcttttaaaggtattgattttgctagcgataacgatttttcattaattattgctcta
gactgcggcataaaagccctcgataaagtagcctacgccaaagagaaaaacatcgatttt
attatttgcgaccatcacagacctggcgataccattcccgatgcagtggcggttttagat
gccaaacaaagcgactgtaactacccgtataaagaattgtgcggttgtggcgtaggtttt
aaattaattcaggccttagcaagtaacgaaggtaaaacggttgaagatttaacagaatat
ttagatttagttgccacagccattggtgccgatattgttcctataactggcgaaaataga
gtccttgcctattatgggttacaagttgtaaattcaaatccaagacccggaattaaggct
attttagaacaagttaataaaaatgaatttacaattaccgatgtggtttttattgtggcg
cctcgaataaatgctgccggacgaatgaagcacggtaattacgcagtaactttattaacc
gaaaccaacgaagatttagcaaaaaaatacgccgccgaaataaacgattataatctagat
cgtcgtgaaaccgataaacttattaccgaagaagccttgcaattaattgaaaaattaaac
gaaaaagaccggttaacaacggtggtttatcaggaaaattggcataaaggggttattggt
attgtagcctccagattaaccgaaacttactataggccaactttggtttttactaaaagc
ggcgataaattggcagcatcggcacgctctgtcgtgggattcgatgtttacaatgccttg
gaagcttgtagcgaacacatcgagcagtttggcggccataaatatgctgcaggtttaact
ttaaaagaagaaaactacgaagcttttaaacaagcgtttgaagatgtggtttctaaaact
atcgaaccgcgcttattagtaccagaaattaaaattgatgctcaaataaatttagaggat
atcacgcctaaattttatcgtattttaaaacaatttgcgccttttggtccgggtaatatg
atgcctgtttttatgaccgaaaatttaaaagataccggttacggcaaatgtgttggagaa
gatgataagcatttaagagtaaccgttaaacaagataataacattagttttgttggtata
ggctttggtttaggagataaattagatgttattaaaaacagagcaacatttagtgccgtc
tattctattgatgaaaacgaatggcaaggtgccgttttcttacaacttaaattacgcgat
attaaataa
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