Siansivirga zeaxanthinifaciens: AW14_06980
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Entry
AW14_06980 CDS
T03699
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
sze
Siansivirga zeaxanthinifaciens
Pathway
sze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW14_06980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sze03019
]
AW14_06980
Enzymes [BR:
sze01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AW14_06980
Messenger RNA biogenesis [BR:
sze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AW14_06980
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
AAA_19
MTS_N
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-ProteinID:
AJR03407
UniProt:
A0A0C5WAQ7
LinkDB
All DBs
Position
complement(1510971..1512212)
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AA seq
413 aa
AA seq
DB search
MSFKDLQLNKPILRAVAEAGYDNPTLVQEKTIPVVLEGNDVIVSAQTGTGKTAAFALPIL
QKLFDNQDAPKKGKKIKALIVSPTRELAVQINENFKTYSTYTNLRTTVVFGGTSIEPQID
VLNKGVDILIATPGRLLDLHKQDIINLDYVETLVLDEADLMLDMGFIDDVKKIERLCTRE
KQILLFSATIPFKVEQLANTILTSPERIEVAANSSTSKNINQVLYYVPKKNKIELCLHLL
RNTIKGSILIFRRTKFGVDKLEQTLIKNGYKVESIHGDKSQHLRQEALNKFKNGYVNILI
ATDVAARGIDINELDAVINFDLPNVPETYVHRIGRTARAGKSGTSYSFCSADEKAYVQAI
QQLIQLQLDVINEHPYPLDPKAKPEIHKSKKTGSKHKKGRKSEGSKKKKKRWY
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtttaaagacttacaattaaacaagcctatattaagagccgtagcagaagcaggt
tacgacaaccccactttggtacaagaaaaaacaatccctgttgttttagaaggtaatgac
gttattgtatctgcacaaacaggtaccggaaaaacagcggcttttgctttacctatttta
caaaagctttttgataatcaagatgcgccaaaaaaaggaaaaaaaataaaagctttaatt
gttagtcctacaagagaattagcagtgcaaataaatgaaaattttaaaacttatagcaca
tacactaatttaagaacaactgtggtttttggaggcacttctattgaacctcaaattgat
gttttaaataaaggtgtcgatattttaattgctacacctggtcgcttactcgatttacac
aaacaagacattatcaatttagattatgttgaaaccttagtgctcgatgaagccgactta
atgttagacatgggttttattgacgatgttaaaaaaattgagcgtttgtgtaccagagaa
aaacaaattttattgttttcggcaaccataccgtttaaagttgaacaattggctaatacc
attctaacatcgcccgagcgtattgaggtagcagctaattcttcaacatcaaaaaacatc
aatcaagttttatattacgttcctaaaaaaaataaaattgaattgtgtttgcatttactt
agaaacactattaaaggaagtattttaatatttagacgtacaaaatttggagtagacaag
ctggaacaaacacttataaaaaatggctataaggttgaaagcatccacggagacaaaagt
cagcatctaagacaagaggctttaaataaatttaaaaatggctatgttaatattttaata
gctacagatgttgccgctcgtggtattgatattaacgaattggatgcagttataaatttc
gatttaccaaacgtaccagaaacctatgttcatagaataggaagaactgccagagcaggt
aagtctggtacatcatattccttttgttctgccgatgaaaaagcctatgtacaagccata
caacaacttattcaattacaactcgatgtgattaacgagcacccctaccctttagatcct
aaagcaaaacctgaaattcataaatcgaaaaaaacgggaagtaaacacaaaaaaggtaga
aaaagcgaaggttctaaaaagaaaaagaaacgttggtactaa
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