Siansivirga zeaxanthinifaciens: AW14_07680
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Entry
AW14_07680 CDS
T03699
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
sze
Siansivirga zeaxanthinifaciens
Pathway
sze03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sze00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AW14_07680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sze03021
]
AW14_07680
03019 Messenger RNA biogenesis [BR:
sze03019
]
AW14_07680
Transcription machinery [BR:
sze03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AW14_07680
Messenger RNA biogenesis [BR:
sze03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AW14_07680
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
AAA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AJR03530
UniProt:
A0A0C5WL33
LinkDB
All DBs
Position
complement(1662243..1663919)
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AA seq
558 aa
AA seq
DB search
MFEISQLNEKKLSDLQDIAKKLNIPKYRSLKKTDLVYQILDYQAADPKAVKAVVAPQESK
QETKENTKTESAPAPSKPERKPRQRVQKPVKNTPVKKEDTKKSEPKAEAPQPTAEVAKDQ
NPEVKQDNKQDNKPKHNAQNERKQGDNQPKPKRDNNQQKNQHKNQKNGNIDAGNKDNRNR
YREPDFEFDAIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTGDTV
LGHVRPPKEGEKYFPLIKVSKINGQNPNVVRDRVSFEHLTPLFPQEKFKLAEKQSTISTR
IMDLFSPIGKGQRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQMILLIDERPEEVTDMQ
RNVRGEVIASTFDKEAHEHVKIANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVQPA
SGKILSGGVDANALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEFKGTGN
MELQLDRKISNRRIFPAIDLTSSSTRRDDILLDENTIQRMWVMRKYLADMNPVEAMEFIN
ERFKQTRNNEEFLISMNG
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaatttcacaattaaacgaaaagaaactctctgatttgcaggatattgcaaaa
aaattaaacattcctaaataccgttctttaaaaaaaacggatttagtttatcaaatttta
gattaccaagcagccgacccgaaagctgtaaaagctgtcgttgcaccgcaagaaagcaaa
caggaaacgaaagaaaatacaaaaacagagtctgcaccagcacctagcaaacccgaaaga
aaacctagacagcgtgtgcaaaaacctgtaaaaaatacgcctgtaaagaaggaagacact
aaaaaatctgagccaaaagcagaagcgcctcagcctactgccgaagttgctaaagatcaa
aatcctgaagtaaaacaagacaacaaacaggataacaaaccgaagcataatgcgcaaaat
gagcgtaagcaaggtgacaatcaacctaaaccaaaaagagataataaccaacagaaaaac
cagcataaaaaccaaaaaaatggtaatattgatgctggcaataaagataacagaaaccgt
taccgcgaaccagattttgaatttgatgccattatagaaagtgaaggtgttttagacatt
atgcaagatggttacggatttttaagatcgtctgactacaattatttatcgtctccagat
gatatttatgtatcgcaatcgcaaattagattgtttggtttaaaaacgggcgatactgtt
ttaggacatgtaagaccaccaaaagaaggagaaaaatatttcccgcttattaaggtaagt
aagattaacggacaaaacccaaatgtggttagagatcgtgtatcatttgaacatttaaca
ccattatttcctcaagaaaaatttaaattagcagagaaacaaagcacgatttcaacgcgt
attatggatttattctcgcctattggaaaaggacaacgtggtatgattgtttcgcagcct
aaaacaggtaaaaccatgcttctaaaagatgttgcaaatgctattgcagcaaatcaccca
gaagtttaccaaatgattcttttaattgatgagcgccctgaagaggttaccgatatgcaa
cgtaatgttcgtggcgaggttattgcttcaacattcgataaagaagcccatgagcatgtt
aaaattgcgaatattgttttagaaaaagcaaaacgcttggttgaatgtggtcatgatgtt
gtgattcttttagattctataactcgtttagctcgcgcttacaacaccgtgcaaccagct
tctggaaaaatattaagtggtggtgttgatgccaatgcgttacacaaaccaaagcgcttt
tttggagcagcaagaaatattgaaaatgggggttctttaactattatagcgactgcgctt
acagaaacaggttctaaaatggacgaagttatttttgaagaatttaaaggtactggtaac
atggaattacagttagatagaaaaatttctaaccgtagaattttccctgctatcgattta
acatcttcgagcactcgtagagatgatattttactagatgaaaatactatacaacgtatg
tgggttatgcgtaaatatcttgctgatatgaatcctgttgaagctatggagtttattaac
gagcgttttaaacaaacaagaaacaacgaagaatttttaatatccatgaatggataa
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