Streptococcus zhangguiae: J5M87_00040
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Entry
J5M87_00040 CDS
T10621
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
szg Streptococcus zhangguiae
Pathway
szg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
szg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
J5M87_00040 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
szg03400
]
J5M87_00040 (mfd)
Enzymes [BR:
szg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
J5M87_00040 (mfd)
DNA repair and recombination proteins [BR:
szg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
J5M87_00040 (mfd)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
Cas3-like_C_2
UB2H
AAA_22
DUF924
RecG_dom3_C
AAA_16
nSTAND_NTPase5
Motif
Other DBs
NCBI-ProteinID:
QTH47805
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All DBs
Position
6503..9997
Genome browser
AA seq
1164 aa
AA seq
DB search
MNIIELVNRNRQIDKWQAGLYQSKRQLIMGLSGTMKALVMASVFDVMDEKCLIVTPTQNE
AEKLTQELINILGSDFVYNFFTDDNPVAEFVFASNDRTKARLDSLNFLLDRKKSGIIVAS
MAACRILLPNPLSYQQARIQLAIGEECEVDKLVKKLQEIGYKKVSRVLSQGEFSQRGDIL
DIFEMGQEHPYRLEFFGDEIDGMRQFDTESQLSIETIEELFITPASDMIFSSEDFLRAEK
KLTDSLQKLQQQEQISYIEEVLADVRQTYRHPDSRKFLSYFYEKEWTLLDYLPRHTPVFF
DDFHKIADRHAQFDVEVAELLTQDLQNNKSLSTLHYFGSTYSSFRKYKPATYFSVFQKGL
GNLTFDAIYQFNQHSMQEFFNQIPLLQDELRHYAKSSHTVILQTESYSSLQRLQKTLQEY
EIELPFVEPNAIKIGQQQITIGQLSTGFHFLDEKIALITEHEIFHKKIKRKARRNTISNA
ERLKDYSELSVGDYVVHSVHGVGQYLGIETIEISGIHRDYLSIQYQNNDRISLPVEQIDV
LSKYLASDGKTPKLNKLNDGRFQRTKQKVVKQVEDIADDLIRLYAERSQLKGFAFSPDDE
NQVEFDQHFTYVETEDQLRSIQEIKKDMEKSSPMDRLLVGDVGFGKTEVAMRAAFKAVND
GKQVAILVPTTVLAQQHFANFQSRFAEFPVNIDVMSRFKTKAEQEATLEKLKKGQVDILI
GTHRLLSKDVEFADLGLLVIDEEQRFGVKHKERLKELKSKIDVLTLTATPIPRTLQMSML
GIRDLSVIETPPTNRYPVQTYVLETNPTIIRDAILREMDRGGQVYYLYNKVDTIEQKVSE
LRDLVPEATIGFVHGQMSEIQLENTLLSFIEGEYDVLVTTTIIETGVDIPNANTLFIENA
DHMGLSTLYQLRGRVGRSNRIAYAYLMYRPDKNLTEVAEKRLEAIKGFTELGSGFKIAMQ
DLSIRGAGNILGAAQSGFIDSVGYELYSQLLENAILEKQGKQARREKSNTELNLSIDAYL
PSEYITDQRQKIEIYKRIKQLENRVDYEELQDELIDRFGEYPDVVAYLLEIGLLKSYFDQ
LFAQKVERKQEQIIVTFEEISGQIFLMQDYFEALSATKLKARISENMGRVELVFLSDKKK
DYQIIEELVHFAEKMLEIKARKNS
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcattgaattagtcaatcgcaataggcaaattgacaagtggcaagcaggttta
tatcaatcaaagcgtcagctcatcatgggactttcaggaacgatgaaggccctcgtcatg
gcatcagtatttgatgtaatggatgaaaaatgtttgattgtaacaccaactcagaatgaa
gctgagaaactaactcaagaattaataaatatcttgggaagtgattttgtttacaacttc
tttacagatgacaatcctgtagctgaatttgtttttgcctctaatgaccgcacaaaggct
cgattagacagtctgaactttcttctagatagaaagaaatcagggattattgtagctagt
atggctgcctgccgtattctattgcctaatcctttgtcttatcaacaagctaggattcaa
ttagcaataggagaagaatgtgaagttgacaaacttgtaaagaaattacaagaaatcggc
tataaaaaagtttctcgtgtcttatcccaaggtgaatttagtcaacgtggagacattctt
gatatttttgaaatgggtcaagaacatccctatcgtttggaattttttggtgatgagatt
gacggtatgcgtcagtttgatactgagagtcaattgtcaattgaaacaattgaagaattg
tttatcacaccagcttctgatatgattttttcttcagaagattttttgcgtgctgaaaaa
aaattgacagatagtttacagaaactacagcaacaagaacagatttcttatatagaggag
gtcttggcagatgtcagacagacctaccgtcatccagatagtcggaaatttctatcttat
ttctatgaaaaagaatggactttactcgattatcttcctagacacacaccagtatttttt
gatgattttcataaaatagctgatcgacatgctcaatttgatgtagaagttgcagaacta
ttgacacaagatttacaaaataacaagtctctgtcaacgttacattattttggatctacc
tactcatcttttagaaaatacaaacctgcaacctacttttctgtctttcaaaaaggatta
ggcaatctcacatttgatgcaatttatcaatttaatcaacattccatgcaggagttcttc
aatcaaattccgttattgcaagacgaattgagacactatgctaagtcttcacatacggtt
attcttcaaacagagtcatattcttctttacaacgtttacaaaaaacattacaggaatat
gagattgaattgccttttgttgagcctaatgctataaaaataggtcagcagcaaattacc
attggtcagttatcaacgggctttcatttcttagatgagaagattgccttgattactgag
catgaaatttttcataaaaagattaaacgaaaagcccgtcggaatacgatttcaaatgcc
gaacgattaaaggattatagtgaattgtctgtaggcgattatgtagtccactctgttcac
ggtgttgggcaataccttggaattgaaacaattgaaatatcgggaattcatcgcgattat
ttgagtattcaataccagaacaatgatcgtatttccctaccagttgaacaaattgatgta
ttgtccaagtatcttgcttcagatggtaaaacacccaaactcaataaattaaatgatggt
cgtttccaacgaaccaagcagaaggtagtaaaacaggttgaagatattgcggatgatttg
attcgtctttatgcagagcgtagtcaattaaaaggctttgctttctcacctgatgatgaa
aatcaagtcgagtttgaccagcatttcacttatgttgaaacagaagaccaacttcgttcc
atacaagaaatcaaaaaagatatggaaaaatcatctccaatggatcgtctattggtagga
gatgttggttttggtaaaacagaagttgccatgcgtgctgcctttaaagcagtcaatgat
ggtaaacaagttgctattttagttccgacaacagttttagctcagcaacattttgcgaat
ttccaaagtcgttttgcagagtttcccgttaatattgatgtgatgagccgttttaagacc
aaggctgagcaagaagcgacacttgaaaaactcaaaaaaggtcaagtagatattttgatt
ggaacccaccgcttattgtcaaaagatgttgaatttgctgatttggggcttttagtcatt
gatgaagagcagcgttttggagtaaagcataaagaacgcttgaaagaattgaaaagtaaa
attgatgttctgacattaacagcaacgcctattccaagaacattgcagatgtctatgttg
ggaattcgcgatttatctgttattgaaacaccaccgacaaatcgctatcctgttcaaact
tatgttttagaaacaaatccaacgattattcgcgatgctattttacgagagatggataga
ggtggacaagtttactatctttacaataaagttgacactattgaacaaaaagtgtctgaa
ttgagagatttggtaccagaagcaacaattggttttgttcatgggcaaatgtcagagatt
caactggaaaatacgctcctatcctttattgaaggggaatatgatgtgttagtgacaacc
actattattgaaacaggggttgatattccaaatgccaataccctatttattgaaaatgca
gatcacatgggactgtcaaccttgtatcaattaagaggacgtgttggtcgttcaaatcgt
attgcctatgcctatttaatgtatcgtccagataaaaatttgacagaagttgcagaaaag
agattggaagccataaaaggatttaccgagttagggtctggttttaaaattgccatgcaa
gatttatctattcgaggtgctggcaatatcttaggagctgcgcaaagtggttttattgat
tcagttggatatgaactctattctcaattgttagaaaatgctattttggaaaagcaagga
aaacaagctagacgggaaaaaagtaatacggaacttaatttatcgattgatgcttatttg
ccaagcgagtatattacagaccaacgtcaaaaaattgaaatttataagcgcattaagcaa
cttgaaaatcgtgtggattatgaagaattacaggatgaattgattgatcgattcggagaa
tatccagatgtagttgcctatcttttggaaattggcttattaaaatcttatttcgatcaa
ctatttgctcaaaaagtggaaagaaaacaagagcaaattatcgtaacatttgaagaaata
tcgggtcaaattttcctaatgcaagattattttgaggcactttctgcgaccaagttaaaa
gctcgtatttctgaaaatatgggccgtgtagaattagtctttttatcagataagaagaaa
gattatcaaattatcgaggagctcgtgcattttgctgaaaaaatgctagaaattaaggct
cgaaaaaactcctaa
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integrated database retrieval system
