Streptococcus zhangguiae: J5M87_02690
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Entry
J5M87_02690 CDS
T10621
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
szg Streptococcus zhangguiae
Pathway
szg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
szg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
J5M87_02690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
szg03019
]
J5M87_02690
03009 Ribosome biogenesis [BR:
szg03009
]
J5M87_02690
Enzymes [BR:
szg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
J5M87_02690
Messenger RNA biogenesis [BR:
szg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
J5M87_02690
Ribosome biogenesis [BR:
szg03009
]
Prokaryotic type
rRNA helicases
J5M87_02690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Helicase_RecD
DUF6363
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTH48256
LinkDB
All DBs
Position
531337..532905
Genome browser
AA seq
522 aa
AA seq
DB search
MKFNELQLSADLLAEIETAGFVEASPIQEKTIPLALEGRDVIGQAQTGTGKTAAFGLPTL
EKIRTDEQIVQALVIAPTRELAVQSQEELFRFGRGKGVKVRSVYGGSSIEKQIKALKTGA
HIVVGTPGRLLDLIKRKALKLNHVETLILDEADEMLNMGFLEDIESIISRVPEERQTLLF
SATMPAPIKRIGVQFMKNPEHIQIEAKELTTELVDQYYVRVKEQEKFDTMTRLMDVDQPE
LSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQSKRLRVLRDFKTGGLDVLVATDVAA
RGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVSPNEMGYLKIIEDLTKK
RMTGMKPATAEEAFQAKKKIALKKIERDFANESIRKNFDKFGKDAIKLASEFSPEELAMY
ILSLTVQDPESMPEVEIAREKPLPFKYVPGDKGGGRGKSSGKGGRSSNNRRGDDRRNGGR
RDYKEKRRSNDRDRFGKDNKKPRKRISSEKKTGFVIRNKGDK
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaatgaattacagttatctgctgacttgctagcagaaattgaaacagcaggg
tttgtggaagccagccccattcaagagaagaccattccccttgcccttgagggaagagat
gttattggtcaagcacagacaggaacaggaaaaacagctgcctttggtttgccaactctt
gaaaaaattcgcacagatgagcagattgtgcaagccttagtgattgcaccaacgcgcgaa
ttagcagttcaaagtcaggaagagctcttccgttttggacgaggtaagggggtcaaagta
cgctcagtctacggtggttcgagtattgaaaaacaaatcaaggcactgaaaacaggtgcg
cacatcgtagttggaacgccaggtcgtcttcttgatttaattaaacgcaaggccttgaaa
ctcaatcatgtggaaacccttatccttgatgaagcagatgaaatgctaaatatgggcttc
ttggaagatattgaatctattatttctcgtgttccagaagagcgccagacccttctcttt
tcagcgactatgccagctccgattaagcggattggcgttcaatttatgaaaaatcctgaa
catattcagattgaagccaaagaattgaccacggaattagtggatcaatactatgttcgt
gttaaagagcaggaaaaatttgataccatgactcgtctcatggatgtcgatcagccagaa
ttgtcgattgtatttggtcggaccaagcggcgtgtggatgaattgacccgtggattgaaa
atcagaggttttcgtgcagaaggaattcatggcgacttggatcaaagcaagcggctccgc
gttctgcgtgatttcaaaacgggcggtcttgatgtccttgttgcaacggatgttgcagcc
cgtggtctagatatttcaggcgtgacgcatgtctataactatgatattccgcaggatcca
gaaagctatgttcaccgtatcggccggacaggtcgtgcaggaaaatctggtcaatccatt
acctttgtatcgccaaatgaaatgggctatctcaagattattgaagatttgactaaaaaa
cgcatgacaggcatgaaacctgcaacagcagaagaggcctttcaggctaagaaaaagatt
gcgcttaagaaaatcgaacgtgattttgctaatgaaagtatccgcaaaaactttgataaa
tttgggaaagatgcaatcaaattagctagcgaattttcaccagaagaattggctatgtac
atcttgagcttgacagtacaagatcctgaatccatgccagaagtagaaattgcgcgtgaa
aaaccattaccatttaagtatgtcccaggtgataagggcggaggacgaggcaagtcgtct
ggtaaaggtggcagatcttcaaacaaccgccgtggagatgaccgtcgtaatggtggccgc
cgagattataaagaaaaacgccgttctaatgaccgtgaccgctttggaaaagacaataaa
aaaccacgcaaacgcatctccagcgagaaaaaaacaggattcgtcatccgcaataaggga
gataaataa
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