Shewanella zhangzhouensis: K0H63_04135
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Entry
K0H63_04135 CDS
T09194
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
szh
Shewanella zhangzhouensis
Brite
KEGG Orthology (KO) [BR:
szh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
szh03009
]
K0H63_04135 (dbpA)
Enzymes [BR:
szh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K0H63_04135 (dbpA)
Ribosome biogenesis [BR:
szh03009
]
Prokaryotic type
rRNA helicases
K0H63_04135 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
Cas3-like_C_2
ResIII
AAA_30
CMS1
AAA_19
Helicase_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QYK06040
LinkDB
All DBs
Position
complement(966195..967598)
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AA seq
467 aa
AA seq
DB search
MSNSDTQPSLAFSTLKLKTELLENLSSMGYHEMTPIQAQSLPAILAGEDVIGQGKTGSGK
TAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLARGIHNVKVLTLCGGVPMG
PQVGSLEHGAHIIVGTPGRIVDHLERDRLDLSNLNMLVLDEADRMLEMGFQPQLDAIIAR
SPRERQTLLFSATFPEQIQTIAQQVMYNPVMVKVATTHEKSTIAQHFFHLEDDAARMQAL
QLLLIEHKPESAVVFCNTKRETQKVADDLTAAGFSVLALHGDLEQRDRDETLLQFANKSA
CVLVATDVAARGLDIDALDAVFNYHVAHDTEVHIHRIGRTGRAGSKGAAFTFFNDKDGYK
IALLEEYLERDIQSEPLPSASLLGSMPKAPAMITLQIDGGKKDKLRPGDILGALTGQNGI
EGGQVGKILVTDYRAYVAVDRKVAKKALGKITSGRIKGKSYRAWLMK
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaattcagatacccagccttcactggctttttccacccttaagcttaaaaccgaa
ctgcttgagaacctgtcctccatgggttaccacgagatgacgcccattcaggcccagagt
ttgccggccattctggcgggtgaggatgtgattggtcagggcaaaaccggctcaggcaaa
accgctgcctttggtctgggtttactgaacaagctggatgtgaagcgttttcgcattcaa
accctggtgctgtgccctacccgtgagctggccgatcaggtggcccaggagatccgcacc
ctcgcccgtggcatccacaacgtcaaagtgcttaccctttgcggcggtgtgcccatgggg
ccacaggtgggctcgctggaacatggcgcccacatcattgtggggacgccggggcggatt
gttgatcacctggagcgcgatcgcctcgatttgagcaatctcaatatgttggtgctcgat
gaagccgaccgcatgctggaaatgggctttcagccgcagctggatgcgattattgccaga
agcccgagggagcgccagaccctgctgttcagcgccaccttccccgaacagattcaaacc
attgcccagcaggtgatgtataaccccgtgatggtgaaagtggccaccacccacgagaag
agcaccattgcccagcacttcttccatctggaagacgatgctgcccgcatgcaggcgctg
caattgttgctgattgagcacaaacccgagagcgccgtggtgttctgtaacaccaagcgt
gaaacccagaaggtggccgatgatcttacggccgcaggtttcagcgtactggcgctccat
ggcgaccttgagcagcgcgacagggacgaaaccctgctgcaatttgccaacaagagcgcc
tgcgtgttggtcgccaccgacgtggccgcccgcggtttggatatcgatgccctcgatgcg
gtattcaactaccacgtggcccacgacacagaggtgcacattcaccgtattggccgcacc
ggccgtgcgggcagcaagggcgccgcctttaccttctttaatgacaaagacggctacaag
atagcgttgttagaagagtatctggagcgcgacattcaaagcgagccgctgccctcagca
agcctccttggcagcatgcccaaggcgccagccatgatcaccttgcaaatcgacggcggt
aaaaaagataagctgcgccccggcgatatcctgggtgccctgaccggccaaaacggcatc
gaaggcggccaggtgggcaaaattctggtgacagactaccgcgcctatgtggcggttgac
cgcaaggtggcaaagaaggccctgggtaaaatcacctccggccgtattaaaggcaagtcg
taccgcgcctggctgatgaagtaa
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