Shewanella zhangzhouensis: K0H63_05255
Help
Entry
K0H63_05255 CDS
T09194
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
szh
Shewanella zhangzhouensis
Pathway
szh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
szh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K0H63_05255 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
szh03019
]
K0H63_05255 (pnp)
03016 Transfer RNA biogenesis [BR:
szh03016
]
K0H63_05255 (pnp)
Enzymes [BR:
szh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K0H63_05255 (pnp)
Messenger RNA biogenesis [BR:
szh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K0H63_05255 (pnp)
Transfer RNA biogenesis [BR:
szh03016
]
Prokaryotic type
tRNA degradation factors
K0H63_05255 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
S1_2
Motif
Other DBs
NCBI-ProteinID:
QYK06238
LinkDB
All DBs
Position
1209496..1211595
Genome browser
AA seq
699 aa
AA seq
DB search
MNPIVKSFEYGQHTVTLETGVIARQADGAVMASMGDTTVLVTVVGKKEADPGRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDDFTNEVQVIITVVSVD
PQIEPDIVSMIGTSAALAISGIPFNGPLGAARVGYVNGEYVLNPGAAELAGSELDLVVAG
TQSAVLMVESEAKSLPEEVMLGAVVYGHDQQQVVINAINEFAAEAGKPRWDWTAPVKNET
LVAQIKELAEEGLTAAYQIMAKQERYEAVGEVKKATIAKLQEANPEVNVREAADLLGSLE
KNVVRSRIIAGMPRIDGREPDMIRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDNFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
GSARPDISDFAPRITTIKINPEKIRDVIGKGGAVIRALTEETGTTIELEDDGTVKIASNN
GDATREAIRRIEEITSEVEVGRLYTGKVIRIVDFGAFVNILPGKDGLVHISQISDERVAN
VSDHLQLNQEVTVKVMEVDRQGRVRLSIKEAQVKEPAAE
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
gtgaatcctatcgtaaaaagttttgagtatggtcagcatacagtcactctggaaacaggc
gtaatcgctcgtcaagccgatggtgccgtaatggcaagcatgggcgacacaactgtactg
gttaccgttgtgggcaagaaggaagcagacccaggccgtgacttcttcccacttaccgta
aactaccaggaaaaaacttacgcagctggtaagatcccaggtggcttctttaagcgtgaa
ggccgtccatctgaagacgaaactctgattgcccgattgatcgatcgtccaatccgcccc
ctgttccctgatgactttaccaacgaagtacaggtcatcatcacagtggtatcggtagac
cctcagattgagccggacattgtttctatgatcggtacttctgctgccctggcgatttca
ggtattccattcaatggtccactgggcgctgcccgcgtaggttatgtgaatggcgaatac
gtgctgaacccaggtgccgctgaactggctggcagcgaactggatctggtggttgccggt
acccagagcgccgtactgatggttgaatctgaagccaaatctctgccagaagaagtgatg
ctgggcgccgtggtttacggccacgaccagcagcaggttgttatcaatgccatcaacgag
tttgctgccgaagccggcaagccacgttgggattggactgcacctgttaagaacgaaact
ctggttgcacaaatcaaagaactggccgaagaaggtctgacagccgcttaccagatcatg
gccaagcaagagcgttacgaagccgttggtgaagtgaagaaagccaccatcgccaagctg
caggaagccaatcctgaagtgaacgtacgtgaagccgccgatctgctgggcagcctcgag
aagaacgtggttcgcagccgcattatcgctggcatgccacgtatcgatggccgtgagcca
gacatgatccgtgccctgtctgtgatggccggtgtactgccacgtacccacggcagcgcg
ctgttcacccgcggtgaaacccaggcgctggtaacctgtactctgggtaccgagcgtgat
gctcagaagattgactccatcatgggcgagcgcaccaaccgcttcatgctgcactacaac
ttccctccatactctgtgggtgaaaccggtatggttggctcgccaaagcgccgcgaaatc
ggtcacggcaagctggcatggcgtggtatcaacgcggtaatgccgtctgccgaagagttc
ccatactctgtacgtgtggtatctgaaatcaccgagtccaacggttcttcttccatggcc
tctgtgtgcggtacctctctggcgctgatggacgccggtgtacctatcaagacttccgtg
gccggtattgccatgggtctggtgaaagaaggcgacaacttcgtagttctgtctgacatc
ctgggtgacgaagatcatctgggcgacatggacttcaaagtagccggtacccgtgatggt
gttactgcactgcagatggacatcaaaatcgaaggtatcaccaaagaaatcatggaaatc
gctctgcagcaggcttatggcgcccgcgttcacatcctgaacgtaatggaccaggccatc
ggcagcgcccgtccagatatctctgacttcgctcctcgcatcaccaccatcaagatcaac
ccagagaagatccgtgatgttatcggtaaaggcggcgccgttatccgtgcgctgaccgaa
gaaaccggtaccaccatcgagctggaagacgacggtactgtgaagattgcctccaacaat
ggcgacgcgacccgcgaagctatccgccgcatcgaggaaatcacctctgaagtggaagtg
ggccgtctgtacactggtaaggttatccgtatcgttgacttcggtgcctttgtgaacatc
ctgcctggcaaagatggtctggtacacatctcgcaaatcagcgatgagcgtgtagccaac
gtatctgaccacctgcaactgaaccaggaagtgaccgtgaaggtaatggaagtggatcgt
cagggtcgtgtgcgtctgtctatcaaagaagctcaggttaaagaacctgctgccgaataa
DBGET
integrated database retrieval system
