Shewanella zhangzhouensis: K0H63_06290
Help
Entry
K0H63_06290 CDS
T09194
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
szh
Shewanella zhangzhouensis
Pathway
szh03030
DNA replication
szh03430
Mismatch repair
szh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
szh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K0H63_06290 (dnaE)
03430 Mismatch repair
K0H63_06290 (dnaE)
03440 Homologous recombination
K0H63_06290 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
szh03032
]
K0H63_06290 (dnaE)
03400 DNA repair and recombination proteins [BR:
szh03400
]
K0H63_06290 (dnaE)
Enzymes [BR:
szh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K0H63_06290 (dnaE)
DNA replication proteins [BR:
szh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
K0H63_06290 (dnaE)
DNA repair and recombination proteins [BR:
szh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
K0H63_06290 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
DUF655
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
QYK06423
LinkDB
All DBs
Position
1451497..1454970
Genome browser
AA seq
1157 aa
AA seq
DB search
MSQPRFVHLRVHSDFSMTDGLAKVKPILGKAEAEGMAAIALTDQNNLCGLVKFYSTCHDK
GIKPIIGADFWMLVPGFEDEFCAVTVLAMDNEGYQNLTQLISQAYLRGQVQGRVAIDQEW
LLTYNSGILLLSGAKEGDLGKALIKGNAAQATSLTQFYQQHFPDRYFIELIRTGRADEET
YLHMAVKHAAEVGLPVVATNQVVFLSPEDFEAHEIRVAIHDGFTLADNRRPKKYSEQQYL
RSEDEMCELFADIPEAIENTVEIAKRCNATVRLGEYFLPNFPTGDLSTEDFLVERSKEGL
EERLEFLFPDPEVRAEKRKEYDERLDIELQVINQMGFPGYFLIVMEFIQWGKDNGIPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMDRRDEVIDHVAE
LYGREAVSQIITFGTMAAKAVVRDVGRVLGHSYGFVDRISKMIPPEPGMTLAKAFEVEPG
LQEAYDADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTKITDFSPLYCDSEGKNPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIIDWALGMINPRLAKLGKPPVDIAAIPLDDSKSFGVL
KRYETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGHEE
ISYPDATWQHESLKPILEPTYGIILYQEQVMQIAQTLAGYTLGGADMLRRAMGKKKPEEM
AKQRAGFEAGSVQNGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPS
EFMAAVMSADMDNTDKIVTLVDECDRMGLKIIPPDVNKGLFKFTVDEDLNIVYGIGAIKG
VGEGPVEAILEARKDGPFTDLFDFCARIDLKKLNKRVIEKLIYSGALDSLGPHRASMMAT
LPDAMQAADQHAKAQATGQHDMFGLLNDHQEDAKQQFVECTPWPDKIWLEGERETLGLYL
TGHPINQYLKELKNYTSGRLKDIHPTERGKTVKAAGLVVASRVMLTKRGSKMGLLTLDDK
SARLEVMLFTEAFEKFGHLLEKDRILICEGEVSFDDFSGGNRMTARNIIDISEARSHFAK
ALEVDLTSQQATEPMLDKFFDVITPWKGGAVPLIVNFSRADASGRLQLGEEWRVNPSDDL
VLALQTLIGPDKIRIQF
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaaccccgttttgttcatctgcgcgttcactcagatttttccatgaccgatggt
ctggcaaaggttaagcccattttaggcaaggccgaggccgaaggcatggcggcaatcgcg
ctgacggatcagaataacctctgtggtctggtgaaattttacagcacctgccatgacaaa
gggattaagcccattattggtgccgacttctggatgctggtgcctgggtttgaagacgag
ttttgtgccgtcacagtgctggcgatggacaacgagggttatcaaaacctgactcagctt
atcagtcaggcgtatctgcggggccaggttcagggcagggtggcaatcgaccaggaatgg
ctgctgacctacaacagtggcattttgttgctctccggcgccaaagaaggggacttgggt
aaggcgcttatcaagggcaatgcagcccaggccaccagcttaacgcagttttatcagcag
cattttcctgaccggtattttatcgagcttatccgcactggccgggccgacgaagaaacc
tatctgcacatggcggtgaagcatgctgccgaggtgggactgcccgtggtggctaccaat
caggtggtgtttttgagtccggaagactttgaagcccacgaaatccgggtggccattcac
gatggttttactctggctgacaatcgccgccctaaaaaatacagtgagcagcagtatctt
cgcagtgaagacgaaatgtgcgagctgtttgccgatattcccgaggccatagagaacacg
gtggagatcgccaagcgctgtaacgcgaccgtgcgcctcggtgaatacttcctgccgaac
ttccccaccggcgatttaagtaccgaagactttctggtggagcgctccaaagagggcctt
gaagagcggctggagttcctgttccccgaccctgaggttagagccgagaagcgcaaggag
tacgatgagcgcctcgatatcgagcttcaggtaatcaaccagatgggatttcccggttac
ttccttatcgtgatggagtttatccagtggggtaaggataacggcattccggtggggccg
ggccggggctcgggcgcgggctctttggtggcctatgccctgaaaattactgaccttgac
ccgctggaattcgacctgctgttcgagcgctttttgaaccccgagcgggtgtccatgccc
gacttcgacgtcgacttctgcatggacagacgcgacgaggtgattgaccacgtggccgag
ctttacggccgcgaggcggtgtcgcagatcattaccttcggtaccatggccgccaaggcg
gtggtgcgtgacgtaggccgggtgctggggcactcctacggttttgttgaccgtatttcc
aagatgatcccgcccgagccgggcatgactctggccaaggccttcgaggtcgagcccggc
cttcaggaggcctacgacgccgatgaggaagtgaaagaccttatcgacatggcgcgtaag
cttgagggcgtgactcgaaacgccggtaaacacgcaggtggcgtggtaattgcgcccacc
aagatcaccgatttctcgccgctgtattgtgactccgagggcaaaaacccggttacccag
ttcgataagaacgatgtggaatacgcgggactggtaaagttcgactttttggggctcaga
accctcaccattatcgattgggcgctggggatgattaaccccagactggctaagcttggt
aagccgccggtggatattgccgctattccgctggatgacagcaaatcatttggcgtgctc
aaacgctatgagaccacagcggtattccagcttgaatcccgcggcatgaaagaccttatc
aagcgtctgcagcccgactgcttcgaagacatgattgcattggtggccctgttccgtccg
ggcccactgcagtcgggcatggtagataactttattgaccgtaagcacggccacgaagag
atttcatacccggatgccacctggcagcacgagagcctcaaacccatacttgaacccact
tacggcatcattctctatcaggagcaggtgatgcagattgcccaaacgctggcgggctat
accctgggcggcgccgacatgctgcgccgggctatgggtaagaaaaagcctgaagagatg
gccaagcagcgagcaggctttgaagccggctcggtacaaaatggcgtggatggcgagctc
gccatgaagatcttcgacctggtggaaaagttcgccggttacggcttcaacaaatcgcac
tcggccgcctatgctctggtgtcctatcagacgttgtggctcaagacccacttcccgtcg
gagtttatggcagcggtgatgtcggcggatatggacaacaccgacaagattgtaaccctg
gtggacgaatgcgatcgcatggggcttaaaatcattccgccggatgtgaacaagggcctg
ttcaagttcaccgtggatgaagacctcaacatcgtttatggcatcggtgccatcaagggt
gtgggtgaggggccggtggaggccattctcgaggcccgcaaagacggccccttcaccgac
ctgttcgacttctgcgcccgtatcgacttgaaaaaacttaacaagcgggtgattgaaaag
ctgatttactctggggcactggatagcctgggaccgcaccgggcctccatgatggcgaca
ctgccagatgccatgcaggcggcggatcaacacgccaaggcccaggccacaggtcagcac
gatatgtttggtctcctgaacgatcatcaggaagacgccaagcagcaatttgttgagtgc
accccctggccggacaaaatctggctcgaaggtgagcgggaaaccctggggctgtatctc
acgggccaccccatcaatcagtatctgaaagagctgaaaaactacacctcgggcaggctg
aaagatattcaccccaccgagcggggcaaaaccgtcaaggccgccggtttggtggtggcc
agccgggtgatgctcaccaaaaggggctccaaaatggggcttctgactctggatgacaag
agcgcccgcctcgaggtgatgctctttactgaagcctttgaaaagtttggtcatctgctg
gaaaaagaccgcattcttatctgcgaaggggaagtgagcttcgatgacttctccggcggc
aaccgcatgaccgcccgcaatattattgatatcagcgaggcccgaagccattttgccaag
gcgcttgaggtcgatttgacgtcacagcaggccactgagcccatgctggacaagtttttt
gacgtgattacgccctggaagggcggcgccgtgcccctgattgtgaacttcagccgcgct
gatgccagcggccgcttgcaactgggcgaggagtggcgggttaacccctccgatgacctg
gtgctggcactgcaaaccctgataggcccggataaaattcggatccagttctaa
DBGET
integrated database retrieval system
