Shewanella zhangzhouensis: K0H63_07145
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Entry
K0H63_07145 CDS
T09194
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
szh
Shewanella zhangzhouensis
Brite
KEGG Orthology (KO) [BR:
szh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
szh03032
]
K0H63_07145 (topA)
03400 DNA repair and recombination proteins [BR:
szh03400
]
K0H63_07145 (topA)
Enzymes [BR:
szh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
K0H63_07145 (topA)
DNA replication proteins [BR:
szh03032
]
Prokaryotic type
DNA Topoisomerases
K0H63_07145 (topA)
DNA repair and recombination proteins [BR:
szh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
K0H63_07145 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Zn_ribbon_LysW
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
QYK06583
LinkDB
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Position
1652677..1655295
Genome browser
AA seq
872 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSAAEGKASTKSAAEVRKMNP
EDKAKYKAQKDKQALVARMGVDPEHGWRANYQVLPGKEKVVKELQSLASSADQIYLATDL
DREGEAIAWHLQEVIGGDESRYKRVVFNEITKGAIQEAFSRPTDLNTNMVNAQQARRFLD
RVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVEREAEIKAFVPEEFWDVHATLSTPAAA
ELVMEVSRCRNEAFEPVTQSEAMAAVNALEKAAFTVTDREDKATSSKPSAPFITSTLQQA
ASTRLGFGVKKTMMLAQRLYEAGHITYMRTDSTNLSQEALENVRAHIEKEFGSKYLPESP
IRYGSKEGAQEAHEAIRPSNVKVESATLTDMERDAQRLYELIWRQFVACQMTPAVYDATR
LTAKAGDYELKASGRILKFDGWTRVQPALKKKNEEDNTLPDVQVGDTLSLKALDPKQHFT
KPPARYSEASLVKELEKRGIGRPSTYAAIISTIQDRGYVKVENRRFYAEKMGEIVTERLV
ESFSELMNYDFTAGMEQTLDDVAKGDKDWKGVLDGFYSGFTAKLEKAEAEPDAGGMRPNQ
MVLTDIPCPTCGRQMGIRTGTTGVFLGCSGYALPPKERCKTTLNLTPGEEAISDSSEDAE
TDALRAMHRCSKCGTAMDSYLLDETRKLHVCGNNPECDGYEVEKGAFKLKGYEGPIIECD
RCGSDMELKNGRFGKYFGCTNESCKNTRKLLKNGEAAPPKEDPIHLPELKCTKSDAYFVL
RDGAAGIFLAASTFPRSRETRAPLVEELKKYREALWPKYQYLADAPVEDAQGNKALVKFS
RKTKEQYVATEVNGKATGWSAHFKDGKWVESK
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcgctcgttattgtcgaatcgccggcgaaagccaagaccatcaacaagtat
cttggtaaagaatttattgtgaaatcgagtgttggccacattcgtgatctgccaacctcg
tctgccgccgaaggcaaagccagcaccaagtcagctgccgaagttcgcaagatgaatcct
gaagacaaggccaaatacaaggcacaaaaggataagcaagccttggttgcccgtatgggt
gttgaccccgaacatggatggcgagccaactatcaggtactccccggtaaagagaaggtg
gtcaaagaactgcaatctctcgccagcagcgccgaccaaatctatctcgcaaccgacttg
gatagagaaggggaggccattgcgtggcatttgcaggaagtgataggtggtgatgaatcc
agatacaagcgcgtggtatttaacgaaattaccaaaggcgccattcaggaggccttcagc
cgccccactgatttgaataccaatatggttaatgcccagcaggccagacggttcctcgac
cgtgtcgtgggctttatggtgtcgcctttgctgtggaaaaaggtggcccggggcttatcg
gccggtcgcgtacaatcggttgctgtgcgattggtggttgagcgtgaagccgaaatcaag
gcgtttgtgccggaagagttttgggacgttcacgccactctgagtacaccagcggcagct
gagttagtgatggaggtcagtcgctgtcggaatgaagcttttgaacctgttacccagtca
gaggccatggctgcggttaatgcgctcgaaaaagcggctttcaccgtcacagatcgtgag
gacaaggctacctccagtaagccaagcgctccctttatcacctccaccctgcaacaggcg
gcgagcacccgtttgggctttggggtgaagaagaccatgatgctggcccaaaggctctac
gaagccggccacatcacctatatgcgtaccgattcaaccaacttgagccaggaagcgctg
gaaaatgtgcgcgcgcacattgaaaaggaatttggcagtaagtatctacccgagtctcca
atacgttacggcagcaaagaaggtgcacaagaggctcacgaagccatacgtccttcaaac
gttaaggtagaatctgccaccctgaccgatatggaaagggacgcacagcgcctctatgag
ctgatttggcggcaatttgtggcttgtcagatgacacctgccgtttacgatgcaacccgc
ttaactgccaaagctggcgattatgagcttaaggccagcggccgtattctcaaatttgat
ggttggacccgtgtacagcctgcgctgaagaaaaagaacgaagaagacaacaccctgccg
gatgttcaggtgggtgatacgctctcgctcaaggcgctggatcccaagcagcattttacc
aagcctcctgcacgttacagcgaagcctcgctggtaaaagagctcgaaaagcgcggcatt
ggccgtccatcaacctacgcagccatcatctcgaccattcaggaccgtggctacgtgaag
gtggaaaaccgccgtttctacgccgaaaagatgggtgagattgtcaccgagcgtttggtc
gaaagcttcagtgagctgatgaactacgactttacagcgggaatggaacagactctggac
gatgttgccaagggcgacaaagactggaaaggcgtgctggatggtttttatagtggcttt
accgccaagctggagaaagccgaggctgaacccgatgccggtggtatgcgtcccaatcaa
atggtgctgacagatattccctgtcccacctgtggccgccaaatggggatccgtaccggc
acaacaggtgtgttcctgggctgctcgggttatgcattgccccccaaagagcgttgtaag
acgaccctgaatctgacgccgggtgaagaagccatcagcgacagcagtgaagatgccgag
accgatgcgcttagagctatgcatcgctgtagtaagtgcggcacggccatggactcttac
ttgctggatgaaacccgaaagcttcacgtgtgcggtaataatcccgagtgtgacggctat
gaggttgaaaaaggcgcatttaagcttaaaggctacgaaggccccatcatcgagtgcgac
cgctgtggcagcgatatggagctaaaaaacggccgattcggtaagtattttggctgtacc
aacgagagctgtaaaaatacccgtaagctccttaaaaatggggaagctgcgccaccgaag
gaagatcctatccatcttccggagctgaaatgcaccaagtctgacgcctattttgtgctc
agagacggcgctgcagggatcttccttgcggccagtactttcccgcgctcacgggaaacc
cgcgcgcctttggttgaagaactgaagaagtaccgtgaagccctgtggcccaagtatcag
tatctggcggatgcgcctgttgaggatgcccaaggtaataaggcgctggtgaaattcagc
cgtaagaccaaagagcaatatgtggccactgaagtcaatggtaaagccacaggttggagt
gctcacttcaaagatggtaaatgggttgagtccaagtaa
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