Shewanella zhangzhouensis: K0H63_16280
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Entry
K0H63_16280 CDS
T09194
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
szh
Shewanella zhangzhouensis
Brite
KEGG Orthology (KO) [BR:
szh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
szh03019
]
K0H63_16280 (hrpB)
Enzymes [BR:
szh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
K0H63_16280 (hrpB)
Messenger RNA biogenesis [BR:
szh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
K0H63_16280 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
ResIII
AAA_30
T2SSE
Motif
Other DBs
NCBI-ProteinID:
QYK04597
LinkDB
All DBs
Position
complement(3708999..3711515)
Genome browser
AA seq
838 aa
AA seq
DB search
MTLNALPVCDLFDELKRSLAQHQQLILEAPTGAGKSTALPLALLDWPEISGRIIMLEPRR
VAARSVARFIAKQRGCQLGAEVGYRVRGDSKVSKETRLEVVTEGILTRMIQDDPELDGVG
LIIFDEIHERHLSTDLGLALALEVQAGLRDDLKILAMSATLSGMPLQTLMPEAVLLRSEG
RSYPVAVEYASVPTGADWQAHMGKILMELATGKRPLPEGVTPGTVLAFLPGKAEIERLKE
SLAERLSESEFAICPLYGELDANAQDRALSADPDGRRKLVLATNVAESSLTIDGVTLVVD
CGFVRQASFNPRTGVTRLGLKRISQASAIQRAGRAGRLAPGLCIRLWSQDEFDRQMKAEE
PEILRSELVSLAQEAAVWGARDFAALKLLSQPPKVNESLAWALLNDLELVDDNHKLTALG
RDAHRLSCHPRLGHMLLKARALGEAENDATLAPLACLLAAILEGRGLPRRGCDISHYLMW
ATSGQAGQQAKQWAAKLGIRVDFAAVAKAAHPRDCGLLLALAYPDRIAMARGKDGFVLAN
GTGITVDESDAMALEPMLVAADFGELEGRSAGRLWLGAPLDARLFDGPLAFLQSEREVSG
FDEGRGRFVAEKQRVVGSLVLGRETVSQVPAALKTSAWIARIRQKGLACLGFDEDAMQLR
RRVSLAASLLGGDWPAMDDEALLDGLEDWLGPYLGNINSLNEFNKLDAGRLLRDSLDWQL
RRTLDEALPTHYPMATGTQAPIRYEDDGRAMLRVRLQEAYGMAATPLLAGGRLKLTMELL
SPAQRPLALTADLASFWQGPYQEVKKEMRGRYPKHLWPDDPANTLPTKFTKKKTLGQA
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atgaccttgaacgctctgcctgtctgcgacctttttgacgagctgaaacgctcgctcgcc
cagcatcagcaactcatcctcgaagcccccacaggtgccggtaagtccacggcgctgcca
ctggcattgctggattggccagagatatccggtcgcatcattatgctcgagccccgccgg
gtggcggcgcgcagcgtggcgcgctttattgccaaacagcgaggctgtcagcttggcgcc
gaggtgggctaccgggtgcgcggcgacagcaaggtctccaaagagacccgcctcgaggtg
gttaccgaaggcattttgacccgaatgatccaggacgatcctgagctcgatggggttggg
cttatcattttcgatgaaatccacgagcgccatttgagcaccgaccttgggttggcgctg
gcgctggaagtgcaggcagggctcagggatgaccttaaaatcctggccatgtcggcgacc
ctaagcggtatgccgctgcaaactctgatgcccgaagctgtgctgctacggagtgaaggc
cgcagttatccggttgccgtggaatacgcctcagtgcccacaggcgccgattggcaggcc
catatgggcaaaatcctgatggaacttgccacgggtaaacgcccactgcctgagggggtt
acgccgggcactgtgctcgcgtttttaccgggtaaggccgagattgagcgtttgaaagag
tctcttgccgagcgcctcagcgagtcggaatttgccatctgccccctttacggtgagctc
gatgccaacgcccaggacagggccctcagtgccgatcccgatgggcgccgcaaactggtg
ctggccaccaacgtggccgaatcgagcctgaccatagatggggtgactctggtggtggac
tgcggctttgtgcgccaggccagtttcaatccccgcaccggtgttacccgccttggactt
aagcgcatcagccaggcctctgccattcagcgtgccggccgggccggacgactggcaccg
gggctctgtatccggctttggagtcaggacgagtttgaccgccagatgaaggcagaagag
ccggagatcttacgcagtgagctggtatcactggcccaggaagccgccgtatggggcgca
cgggattttgccgcattaaaactgctgtcccagccgccaaaagtgaacgagtctcttgcc
tgggcgctccttaacgatttggagctggtggacgacaaccacaagctcacggcccttggc
cgggatgcccatcgtctgagctgccatccccgcctggggcatatgctgcttaaagccagg
gcgctcggagaggctgaaaacgatgccaccctggcgccgctggcatgcctgctggcggcc
attctggaaggccgtggattaccgcgcaggggctgtgacatcagccactacctgatgtgg
gcaacgtcgggccaggccggtcagcaagctaaacagtgggcggccaagctcggcatcagg
gtcgatttcgccgctgtggccaaagccgcccatccacgggactgcggcctcttactggcg
ctggcgtacccggaccgtatcgccatggcccgcggcaaggatggttttgtgctggccaat
ggcaccggcattacagtggatgagagcgacgccatggcgctggagcccatgctggtggcg
gcggattttggagaactcgaaggccgcagcgcggggcgcttgtggctgggggcgccgctg
gatgcgcgcctcttcgacggtccgctggcctttttgcaaagtgagcgcgaggtcagtggc
tttgatgaaggccgcggccgctttgtggccgaaaagcagcgggtggtgggcagtctggtg
cttggccgcgaaaccgtgagtcaggtgcccgcggccctcaaaaccagcgcctggatagcc
cgtattcgccagaaaggattggcgtgtctgggctttgatgaggatgccatgcagctcagg
cgcagggtctcgctggcggccagtttgcttgggggcgattggcccgccatggacgatgag
gcgctgcttgatggcctcgaagactggctcgggccttatttgggcaatatcaacagcctg
aatgagttcaataaactggacgccgggcgcctgctgcgcgacagcctcgactggcagctg
cgcagaaccctcgacgaagccctgccgacccattaccctatggcaaccggcacccaggcc
cccattcgctacgaagacgatggacgcgccatgctcagggtgcgattgcaggaggcctat
ggcatggcggcaacgcccttgttggctggcggacggcttaagctcaccatggagcttctg
tctccggcacagcggccattggccctgacggcggatctggccagcttttggcaaggcccc
tatcaggaagtaaaaaaggaaatgcggggccgttatcccaagcatttgtggccggacgat
ccggcaaacaccttaccgaccaaatttaccaagaaaaagaccttgggccaggcctga
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