KEGG   Shinella zoogloeoides: K8M09_01060
Entry
K8M09_01060       CDS       T07727                                 
Name
(GenBank) ligase-associated DNA damage response DEXH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
szo  Shinella zoogloeoides
Brite
KEGG Orthology (KO) [BR:szo00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:szo03400]
    K8M09_01060
Enzymes [BR:szo01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     K8M09_01060
    5.6.2.6  RNA 3'-5' helicase
     K8M09_01060
DNA repair and recombination proteins [BR:szo03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    K8M09_01060
SSDB
Motif
Pfam: DEAD_assoc WHD_Lhr DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-ProteinID: UEX81923
LinkDB
Position
218111..220636
AA seq 841 aa
MSIIDSAAGLSLLPKSFADWFAAKGWQPRAHQMELLARAAGGESLLLIAPTGAGKTLAGF
LPALTDLAQRGKIPPGSAFTGIHTLYISPLKALAVDIERNLMKPVSEMGLPITVETRTGD
TPQAKRQRQRLNPPDILLATPEQVALLIANGEAPRFFKDLKYVIFDELHSLVTSKRGHLL
SLGLARLRRLAPGLRTIGLSATVAEPMDLRRWLVEQGTDTENHAGLVTAPGGAKPIITIL
KSEERVPWSGHSAKYAMPEVYAAIRDHRTSLLFVNTRSQAEILFQELWNINEDTLPIALH
HGSLDVGQRRKVEQAMAENRLRAVVATSTLDLGIDWGDVDLVIHVGAPKGASRLAQRIGR
ANHRMDEPSRAILVPANRFEVMECQAALDANYLGAQDTPPVGEGALDVLAQHVLGMACAA
PFDEDVLFAEVTSASPYAGLSREKFGRIVQFVATGGYALKTYERYARIRKTVDGLWRVSN
PQVAQQYRLNLGTIVEMPMLNVRMVKRGAKGAVGRGGASLGKVEEYFLEMLSPGDTFLFS
GKVLRFEGIRENECLVSQAFSLDPKVPAYAGGKFPLSTYLADQVRGMLDDPHRWGALPEQ
VRDWLALQRDVSSLPKRDELLIETFPRGSRHYMVAYPFEGRLAHQTLGMLLTRRLERAGR
RPLGFVATDYSLAVWALDDLGYSFAVERPSLENLFDEDMLGDDLEAWLDESFMLKRTFRN
CAVIAGLIEQRHPGKEKTGRQVTVSADLIYDVLRSHEPDHILLEATRNDAAAGLLDIQRL
GDMLARIKGHITHRRLDRISPLAVPIMLEIGKEPVAGEAQDSLLAEAAEDLIVEAMGEVA
I
NT seq 2526 nt   +upstreamnt  +downstreamnt
gtgagcatcatcgattctgccgccggcctctccctcctgcccaaatcctttgccgactgg
ttcgcggccaagggctggcagccgcgcgcgcaccagatggagcttctggcgcgcgctgcg
ggcggcgagagcctgctgctcatcgcgcccaccggcgcgggcaagacgctggccggtttc
ctgccggcgctgacggaccttgcacaacgcgggaaaatcccgcccggctccgccttcacc
ggcatccatacgctctatatctcgccgctgaaggcgcttgccgtcgatatcgagcgcaac
ctgatgaagcccgtgtccgaaatgggcctgcccatcaccgtcgagacgcgcaccggcgat
acgccacaggcaaagcgccagcgccagcgcctcaacccgcccgatatcctgctggcgaca
ccggaacaggtcgctctcctcatcgccaacggcgaagcaccgcgctttttcaaggacctg
aaatacgtcatcttcgacgaactgcattcgctcgtcacctccaagcgcggtcatctgctg
tcgcttggccttgcgcgactgcgccggcttgcgccggggctgcgcaccatcggcctttcg
gccaccgtcgccgagccgatggacctgcgccgctggctggtggagcaggggacggatacg
gagaaccatgccggcctcgttaccgcgccgggcggggcgaagccgatcatcaccatcctg
aagagcgaggagcgggtgccgtggtccgggcattcggcgaaatatgcgatgccggaggtc
tatgcggcgatccgcgaccacaggacgtcgctgctcttcgtcaacacgcgcagccaggcg
gaaatcctcttccaggaactctggaacatcaacgaggacacgctgccgatcgcgctgcat
cacggctcgctcgatgtcggccagcggcgcaaggtggagcaggccatggcggaaaaccgt
ctgcgcgccgtcgtcgccacgtccacgctcgatctcggcatcgactggggcgatgtcgat
ctcgtcatccatgtcggcgcgccgaagggggcttcgcggctcgctcagcgcatcggccgc
gccaatcaccgtatggatgagccgagccgcgccatcctcgtgccggccaaccgcttcgag
gtgatggaatgtcaggcggcgctcgacgccaattatctcggcgcacaggatacgccgccg
gtgggggagggcgcgctggacgtgctcgcccagcacgtgctcggcatggcctgcgccgcg
cccttcgacgaggatgtgctctttgccgaagtcacctccgcctcgccctatgccgggctt
tcgcgggaaaaattcgggcgcatcgtgcaattcgtcgccacgggcggctatgcgctgaag
acctatgagcgctacgcgcgcatccgcaagaccgtcgacggcctgtggcgcgtctccaac
ccgcaggtcgcgcagcaatatcgcctcaacctcggcaccatcgtcgagatgccgatgctg
aatgtgcgcatggtcaagcgcggcgcgaagggggcggtcgggcgcggcggggcctcgctc
ggcaaggtggaggaatatttcctggaaatgctctcgcccggcgacaccttcctcttttcc
ggcaaggtgctgcgcttcgagggcatccgcgagaacgagtgcctcgtctcccaggccttt
tcgcttgatccgaaagtgccggcttacgcaggcggcaagtttccgctctccacctatctc
gccgatcaggtgcgcggcatgctggacgatccgcaccgctggggcgcattgcccgagcag
gtgcgcgactggcttgccctgcagcgcgacgtttccagcctgccgaagcgcgacgaactg
ctcatagagaccttcccgcgcgggagccggcactacatggtcgcctatcccttcgagggg
cggctggcgcaccagacgctcggcatgctgctgacacggcggctggagcgcgccgggcgg
cggccgctcggcttcgtggcgacggattattcgctggccgtctgggcgctggacgacctc
ggctacagcttcgccgtcgagcgcccctcgctcgaaaacctcttcgacgaggacatgctg
ggtgacgatctggaggcatggctggacgagagcttcatgctgaagcgcaccttccgcaat
tgcgccgtgattgccggccttatcgaacagcgccatccgggcaaggaaaagaccgggcgg
caggtcacggtctcggccgacctcatctacgacgtgctgcgcagccacgagccggaccat
atcctgctggaagcgacacgcaacgatgcggcggcggggcttttggatattcagcgattg
ggcgatatgctggctcgaatcaagggccatatcacccatcgccggctcgaccgcatctcg
ccgctcgccgtgccgatcatgctggaaatcggcaaggagccggtggcgggcgaggcgcag
gattcgctgctggcggaagccgccgaggacctgatcgtcgaggcgatgggcgaggtggcg
atttaa

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