Shinella zoogloeoides: K8M09_01615
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Entry
K8M09_01615 CDS
T07727
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
szo
Shinella zoogloeoides
Pathway
szo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8M09_01615 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
szo03019
]
K8M09_01615 (pnp)
03016 Transfer RNA biogenesis [BR:
szo03016
]
K8M09_01615 (pnp)
Enzymes [BR:
szo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K8M09_01615 (pnp)
Messenger RNA biogenesis [BR:
szo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K8M09_01615 (pnp)
Transfer RNA biogenesis [BR:
szo03016
]
Prokaryotic type
tRNA degradation factors
K8M09_01615 (pnp)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
KH-I_KHDC4-BBP
OB_RRP5_4th
DUF8380
Motif
Other DBs
NCBI-ProteinID:
UEX82023
LinkDB
All DBs
Position
326029..328170
Genome browser
AA seq
713 aa
AA seq
DB search
MFDTHTVEIEWAGRPLKLETGKIARQADGAVLATYGETVVLATVVSAKAPKPGQDFFPLT
VNYQEKTYAAGKIPGGYFKREGRPSEKETLVSRLIDRPIRPLFPEGYKNDTQVVVTVVQH
DLENDPDVLSMVAASAALTISGVPFMGPVGAARVGYINGEYVLNPHLDEMDESVLDLVVA
GTQDAVLMVESEAKELNEDVMLGAVMFGHKGFQPVIDAIIKLAEVAAKEPRDFQPEDYSA
LEAEMLGLAETELRAAYKITQKADRYAAVDAVKAKVKAHFLPEEGEAKYTAEVIGAVFKH
LQAKIVRWNILDTKSRIDGRDLETVRAIVSEVGILPRTHGSALFTRGETQAVVVATLGTG
EDEQYVDSLTGMYKERFLLHYNFPPYSVGETGRMGSPGRREIGHGKLAWRAIRPMLPTAE
QFPYTLRVVSEITESNGSSSMATVCGTSLALMDAGVPLAKPVAGIAMGLILEGDRFAVLS
DILGDEDHLGDMDFKVAGTADGITSLQMDIKIAGITEEIMKVALSQAQGGRKHILGEMAH
AISEGRSQLGEFAPRIEVMNIPVDKIREVIGTGGKVIREIVEKTGAKINIEDDGTIKIAS
SSGKEIEAARKWIHSIVAEPEVGMIYEGTVVKTADFGAFVNFFGPRDGLVHISQLAQERV
AKTSDVVKEGDKVWVKLMGFDERGKVRLSMKVVDQATGKEIAADKKGDGEAAE
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcgatacccatacggttgaaatcgagtgggcgggccgtccgctcaagctggaaacc
ggcaagatcgcccgtcaggctgacggcgcggttctggcgacctacggcgaaaccgtcgtt
ctcgctaccgtcgtttccgccaaggcgccgaagccgggccaggatttcttcccgctgacc
gtcaactaccaggaaaagacctacgccgccggcaagatcccgggcggctacttcaagcgt
gaaggccgtccgtcggaaaaggaaacgctggtttcccgcctgatcgaccgcccgatccgc
ccgctcttcccggaaggctacaagaacgacacgcaggtcgtcgtcacggtcgtccagcat
gacctcgagaacgatcccgacgtcctgtcgatggttgccgcttccgccgcgctgacgatc
tccggcgttcccttcatgggcccggtcggcgccgctcgcgttggttacatcaacggcgaa
tacgtcctgaacccgcatctcgacgagatggacgagtcggttctcgacctcgtcgtcgcc
ggcacgcaggacgccgtcctgatggtcgaatccgaagccaaggaactgaacgaagacgtc
atgctcggcgccgtcatgttcggccacaagggcttccagccggtcatcgacgcgatcatc
aagcttgctgaagtcgccgccaaggaaccgcgcgacttccagccggaagactattccgct
ctcgaagccgaaatgctcggccttgccgaaacggaactgcgcgccgcctacaagatcacc
cagaaggctgatcgctacgccgccgtcgacgccgtgaaggccaaggtcaaggcgcacttc
ctgccggaagaaggcgaagcgaagtacacagccgaagtcatcggcgccgtcttcaagcac
ctgcaggccaagatcgttcgctggaacatcctcgacaccaagagccgcatcgacggccgc
gacctcgaaaccgttcgcgccatcgtttcggaagtcggtatcctgccgcgcacgcacggc
tcggctctcttcacccgcggtgaaacccaggccgtggtcgtcgccacgctcggcaccggc
gaagacgagcagtatgtcgacagcctgaccggcatgtacaaggaacgcttcctgctgcac
tacaacttcccgccctactcggtcggtgaaacgggccgcatgggctccccgggccgccgc
gaaatcggccacggcaagctcgcctggcgcgcaatccgcccgatgctgccgacggcggaa
cagttcccctacacgctgcgcgtcgtctccgagatcaccgagtcgaacggctcgtcctcg
atggccaccgtctgcggcacctcgctcgctctcatggacgccggcgttccgctggcaaag
ccggttgccggtatcgccatgggcctcatccttgaaggcgatcgcttcgcggttctctcc
gacatcctcggtgacgaagaccacctcggcgacatggacttcaaggtcgccggcaccgcc
gacggcatcacctcgctgcagatggacatcaagatcgccggtatcaccgaagagatcatg
aaggtcgcgctcagccaggcgcagggcggccgcaagcacatcctcggcgaaatggcccat
gccatctccgaaggccgcagccagctcggtgaattcgcaccgcgcatcgaagtcatgaac
atcccggtcgacaagatccgtgaagtcatcggcaccggcggcaaggtcatccgcgaaatc
gtcgaaaagaccggcgcgaagatcaacatcgaagacgacggcacgatcaagatcgcgtcc
tcgtccggcaaggagatcgaagcggcccgcaagtggatccattccatcgtcgcggaaccg
gaagtcggcatgatctacgaaggcacggtcgtgaagaccgccgacttcggcgccttcgtc
aacttcttcggcccgcgcgacggcctcgtccacatctcgcagctcgctcaggagcgcgtt
gccaagacctcggacgtcgtcaaggaaggcgacaaggtctgggtcaagctgatgggcttc
gacgagcgcggcaaggttcgcctctccatgaaggtcgtcgatcaggcgaccggcaaggaa
atcgccgccgacaagaagggcgacggcgaagctgctgaataa
DBGET
integrated database retrieval system
