Shinella zoogloeoides: K8M09_05575
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Entry
K8M09_05575 CDS
T07727
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
szo
Shinella zoogloeoides
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
szo01002
]
K8M09_05575
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
szo01011
]
K8M09_05575
Peptidases and inhibitors [BR:
szo01002
]
Cysteine peptidases
Family C82
K8M09_05575
Peptidoglycan biosynthesis and degradation proteins [BR:
szo01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
K8M09_05575
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
PG_binding_1
Motif
Other DBs
NCBI-ProteinID:
UEX82749
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Position
1125160..1126482
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AA seq
440 aa
AA seq
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MSRKTGFDVFSRRAFLRSAATLGAAAVAGPTLAQTAMDDVLNAPRRGNWDDQFDAKASRS
ADAVTSNNPILGSGAVPNIQQAISDYQQIVSAGGWPNVSSSQKLQLGVVDPGVQSLRQRL
MISGDLPREAGISNAFDSYVDGAVKRFQARHGLPQDGVLGEYSLKAMNVPATTRLNQLNT
NMVRLQAMSGDLGQRYVMVNIPAAHIEAVEGGRVASRHVAVVGRLSRPTHILNSKIYDVT
LNPYWTAPRSIVEKDIVPLMRTDPTYLKRNNIRLIDGKGQEVAPETIDWNAEKAPNLMFR
QDPGKINAMSSTKINFHNPNNEYMHDTPQQGLFNKLMRFESSGCVRVQNVRDLITWLLRD
TPGWSRQDIERVIDTRVNTPIRLAVEVPVYFVYISAWSARDRVVQFRDDIYQMDGATELA
LQTGYNQEGGQTVDSDLLPQ
NT seq
1323 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcaaaaccggatttgatgtgttctcgcgccgcgcgttcctgcgctccgccgca
accctcggcgctgctgccgtcgccggcccgacgctcgcccagacggcgatggacgacgtt
ctcaacgcgccgcgccgcggcaactgggacgatcagttcgacgccaaggcctcgcgcagc
gcggacgccgtgacctcgaacaatccgatcctcggctccggcgccgtgccgaacatccag
caggcgatttccgattaccagcagatcgtttccgccggcggctggccgaacgtttcctcc
tcgcagaagctgcagctcggcgtggtcgatcccggcgtccagtcgctgcgccagcgtctg
atgatctccggcgacttgccgcgcgaagccggcatctccaatgccttcgattcctacgtc
gacggcgcggtgaagcgcttccaggcccgtcacggcctgccgcaggacggcgtgctcggc
gaatattcgctgaaggccatgaatgtgccggccacgacgcgcctcaaccagctcaacacg
aacatggtgcgcctgcaggccatgtccggcgatctcggccagcgctatgtcatggtgaac
attcccgccgcccatatcgaggcggtggaaggcggccgcgtggcatcgcgtcacgtcgcc
gttgtcggtcgcctcagccgcccgacgcatatcctcaattccaagatctacgacgtcacc
ctcaatccctactggaccgcgccgcgctcgatcgtcgaaaaggatatcgtgccgctgatg
cgcacggatccgacctatctgaagcgcaacaacattcgcctgatcgacggcaagggccag
gaagtggcgccggaaacgatcgactggaacgccgagaaggcgccgaacctgatgttccgc
caggacccgggcaagatcaacgccatgtcctcgacgaagatcaacttccacaacccgaac
aacgaatacatgcacgacacgccccagcagggcctgttcaacaagctgatgcgcttcgaa
tcgtccggctgcgtgcgcgtgcagaacgtgcgcgacctcatcacctggctgctgcgcgat
acgcccggctggtcgcgtcaggacatcgaaagggtcatcgacacccgcgtcaacacgccg
atcaggctggctgtcgaggttccggtctatttcgtctacatttcggcctggtcggcgcgc
gaccgcgtcgtgcagttccgtgacgacatctaccagatggacggcgccaccgagcttgcc
ctgcagaccggctacaaccaggaaggcggccagaccgtcgacagcgacctgctgccgcaa
taa
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