Shinella zoogloeoides: K8M09_06105
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Entry
K8M09_06105 CDS
T07727
Symbol
hupB
Name
(GenBank) DNA-binding protein HupB
KO
K03530
DNA-binding protein HU-beta
Organism
szo
Shinella zoogloeoides
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
szo03032
]
K8M09_06105 (hupB)
03036 Chromosome and associated proteins [BR:
szo03036
]
K8M09_06105 (hupB)
03400 DNA repair and recombination proteins [BR:
szo03400
]
K8M09_06105 (hupB)
DNA replication proteins [BR:
szo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
K8M09_06105 (hupB)
Chromosome and associated proteins [BR:
szo03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
K8M09_06105 (hupB)
DNA repair and recombination proteins [BR:
szo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
K8M09_06105 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
DUF2267
HU-CCDC81_euk_2
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
UEX82852
LinkDB
All DBs
Position
1215822..1216097
Genome browser
AA seq
91 aa
AA seq
DB search
MNKNELVSAVAEKSGLSKTDAASAVDAVFETIQGELKNGGDVRLVGFGNFSVSRREASKG
RNLSTGAEIEIPARNVPKFSAGKGLKDAVNG
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaacaagaatgaactcgtatccgcagtggctgagaagtccggcctctccaagacggac
gcagcatctgctgtcgacgccgttttcgagacgatccagggcgaactcaagaacggcggc
gacgttcgtctcgtcggtttcggcaatttctccgtgtcgcgtcgcgaagcttcgaagggc
cgcaacctttcgaccggcgccgagatcgagatcccggctcgcaacgtgccgaagttctcg
gccggcaagggcctgaaggacgccgtcaacggctga
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