Shinella zoogloeoides: K8M09_06675
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Entry
K8M09_06675 CDS
T07727
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
szo
Shinella zoogloeoides
Pathway
szo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
K8M09_06675 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
szo03021
]
K8M09_06675 (rpoC)
03400 DNA repair and recombination proteins [BR:
szo03400
]
K8M09_06675 (rpoC)
Enzymes [BR:
szo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
K8M09_06675 (rpoC)
Transcription machinery [BR:
szo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
K8M09_06675 (rpoC)
DNA repair and recombination proteins [BR:
szo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
K8M09_06675 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
UEX82953
LinkDB
All DBs
Position
1333428..1337639
Genome browser
AA seq
1403 aa
AA seq
DB search
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDVERVLYFENYIVTEPGLTALKENQLLSEEEYMIAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSDLADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGFSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLAIQNQNEPGEGMAFSDMGELHHALE
NKVVTLHAKIRGRFKSVDADGKPYTKIYETTPGRMIIGELLPKNGNIPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMIIPETKVKIVGDTETL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEDMMARIKAVEFDPETGRQKPMNAIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTDKGLTMTAIVDAGQVVASIGTRVLGRT
ALDDIDHPVTGARIVDAGRMILEADVVEIEKAGIQSIRIRSALTCEIQTGVCGVCYGRDL
ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQMKNRN
MLRNSEGALVAMGRNMAITILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT
RPMMTEVEGTVHFEDVVDGISVLESTDESTGITKRSVIDWRSTPRGTDLKPAIVIKDKNG
AVAKLSRGGEARFMLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRFGRDYKNKRRVLIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSTYIVGDNIDRIELEDVNDALIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDEMILDERRK
STGAGVATPMLADLAGGEGAAAE
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaaccttttcaacccgcaggtgcctgcgcagacgttcgactcc
atccgtatttcgatcgcgtcgccggaaaagatcctgtcctggtcgtatggcgagatcaag
aagccggaaacgatcaactaccgtacgttcaagccggaacgtgacggtctcttctgcgcg
cgcatctttggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgt
gagcgcatgggccatatcgagctcgccgctcccgttgcccatatctggttcctgaagtcg
ctgccctcgcgcatcgccacgctcctcgacatgaccctcaaggatgtcgagcgcgttctc
tatttcgagaactatatcgtgacggagccgggcctgaccgcgctcaaggaaaaccagctt
ctttccgaagaagaatacatgatcgccgtcgatgaatatggtgaagaccagttcacggcg
atgatcggcgccgaggccatctacgagatgctcgcttcgatgaacctcgagaagatcgcc
ggcgacctgcgttctgatctggccgacaccacgtcggacctgaagcagaagaagctgatg
aagcgcctgaagatcgtcgagaacttcatggaatccggcaaccgtccggaatggatgatc
atgaaggtcgttccggtgatcccgccggacctgcgtccgctggttccgctggacggcggc
cgcttcgcgacgtcggacctcaacgatctctatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctcatcgagctgcgcgcaccgggcatcatcatccgtaacgagaagcgcatg
cttcaggaatcggttgacgccctgttcgacaacggccgccgcggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgacgggc
ccggaactcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgcctcgacgcgaagggtttctcctcgaccgtcaagcaggccaag
aagctcgtcgaaaaggaaaagccggaagtctgggatatcctcgatgaggtcatccgcgag
catccggttctcctgaaccgtgcgccgacgctccaccgtctgggcatccaggccttcgag
ccgaccctggtcgaaggcaaggccatccagcttcacccgctcgtctgcacggccttcaac
gccgactttgacggcgaccagatggccgttcacgtcccgctctcgctggaagcccagctt
gaagcgcgcgtgctcatgatgtcgacgaacaacatcctgcatccggcgaacggcgcaccg
atcatcgtgccctcgcaggacatggttctcggcctctactatctggcgatccagaaccag
aacgagccgggcgaaggcatggccttctccgacatgggcgaactgcaccatgctctggaa
aacaaggtcgtcacgctgcacgccaagatccgtggtcgcttcaagtcggtcgatgccgac
ggcaagccctacacgaagatctatgaaacgacgcccggccgcatgatcatcggcgaactg
ctgccgaagaacggcaacattccgttcgacatctgcaaccaggaaatgaccaagaagaac
atctcgaagatgatcgacacggtctaccgtcattgcggccagaaggacacggtcatcttc
tgcgaccgcatcatgcagctcggcttcgcccatgcctgccgcgccggcatttcgttcggc
aaggacgacatgatcatcccggaaaccaaggtgaagatcgtcggcgataccgaaaccctg
gtcaaggaatacgagcagcagtacaacgatggcctgatcactcagggcgagaagtacaac
aaggtcgtcgacgcctggggcaaggctaccgaaaaggttgcggaagacatgatggcccgc
attaaggccgtcgagttcgacccggaaaccggtcgccagaagccgatgaacgcgatctac
atgatgtcccactcgggcgcccgcggttctccgaaccagatgcgccagttgggcggcatg
cgcggcctcatggcgaagccctcgggcgagatcatcgaaacgccgatcatctcgaacttc
aaggaaggcctgaccgtgaacgagtacttcaactcgacgcacggcgcccgtaagggtctg
gcagacaccgccttgaagaccgcgaactccggttacctgacccgtcgtctcgtcgacgtc
gcgcaggattgcatcgtcacgcatgtcgactgcggcaccgacaagggcctcacgatgacg
gcaatcgtcgacgccggccaggtcgtggcttccatcggcacccgcgttctcggccgtacg
gctctggacgatatcgatcatccggtcaccggcgctcgtatcgtggatgccggcaggatg
atcctcgaggccgatgtcgtcgagatcgagaaggctggtatccagtcgatccgtatccgt
tcggcgctgacctgcgaaatccagaccggcgtctgcggcgtctgctacggtcgcgacctt
gcacgcggcacgcccgtcaacatgggcgaagccgtcggcgtcatcgcggcacagtcgatc
ggtgaaccgggcacccagctcaccatgcgtaccttccaccttggcggcacggcgaccgtg
gtcgaccagtcgttcctggaagcatcgtatgaaggcacggtgcagatgaagaaccgcaac
atgctgcgcaactccgaaggcgcactcgtcgcgatgggccgcaacatggcgatcaccatc
ctcgacgagcgcggcgtggaacgttcctcgcagcgcgtcgcctacggttcgaagatcttc
gtcgacgacggcgacaaggtgaagcgcggccagcgtctcgccgagtgggacccctacacc
cgtccgatgatgacggaagtcgagggcaccgttcacttcgaagacgttgtcgacggtatc
tcggttctggaatcgacggacgaatccaccggcatcaccaagcgttcggtcatcgactgg
cgctcgacgccgcgcggtacggacctgaagccggccatcgtcatcaaggacaagaacggc
gctgtcgccaagctgtcccgcggtggcgaagcccgcttcatgctctcggtcgacgcgatc
ctctcggtcgaaccgggacagaaggtctcccagggtgacgttcttgcccgctcgccgctg
gaaagcgccaagaccaaggacatcaccggcggtctgccgcgcgttgccgaactgttcgaa
gcccgtcgtccgaaggaccacgccatcatcgctgagatcgatggtacgatccgcttcggc
cgcgactacaagaacaagcgtcgcgtgctgatcgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggacggcgactacatcgaa
aagggtgactacatcctcgacggcaacccggcgccgcacgacattctggcgatcaagggc
gtggaggcactcgcttcctacctcgtgaacgaaatccaggaagtctaccgactgcagggc
gttgtgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgag
atcacggatgctggcgactcgacgtatatcgtcggtgacaacatcgaccgtatcgagctg
gaagacgtcaacgacgccctgatcgaggaaggcaagaagccggcttacggcgatccggtc
ctcctcggcatcaccaaggcgtcgctgcagaccccgtcgttcatctcggccgcttcgttc
caggagaccaccaaggtcctcacggaagctgcgattgccggcaagaccgacggcctgcag
ggcctcaaggaaaacgtcatcgtcggccgcctcatcccggccggtaccggcggcaccatg
acccagatccgccgcatcgcgacggcccgcgacgagatgatcctcgacgagcgccgcaag
tcgaccggcgctggcgtcgccaccccgatgctggcggacctcgccggcggcgaaggtgcc
gcagccgaataa
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integrated database retrieval system
