Shinella zoogloeoides: K8M09_07485
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Entry
K8M09_07485 CDS
T07727
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
szo
Shinella zoogloeoides
Pathway
szo03410
Base excision repair
szo03430
Mismatch repair
szo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
K8M09_07485 (recJ)
03430 Mismatch repair
K8M09_07485 (recJ)
03440 Homologous recombination
K8M09_07485 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
szo03400
]
K8M09_07485 (recJ)
DNA repair and recombination proteins [BR:
szo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
K8M09_07485 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
K8M09_07485 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K8M09_07485 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
UEX83105
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Position
1478565..1480373
Genome browser
AA seq
602 aa
AA seq
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MSMLENADPVSRAFLGVERSATGQRWVARLDQAGENRALAMSQTHGLPDLISRVLSGRGV
AFENALEFLDPTLRRLMPEPYSLMDCEAATERLACAIERRERVAIFGDYDVDGASSSALL
YRFLTHFDVPAEIYIPDRIFEGYGPNPNAIGQLIDRGAQLIVTVDCGSTSHESLAVARER
GIDAVVIDHHQVGEELPPAAALVNPNREDDLSGQGHLSAAGVVFLVLVALQRLLRQRGDK
RAESFDLLSMLDLVALSTVCDVVPLKGLNRAYVVKGLVAARHLGNAGLTALLKQAGIGGP
VTPYHLGFLVGPRINAGGRIGDAALGSRLLTIDEAGEAERIAKQLDELNRERQAMEAAML
AEAEAEAQAEYGTGENASVILTAREGWHPGVVGLLASRLKDRFRRPAFAIAFDPSGKGTG
SGRSISGFDLGRMVRAAVDEGILVKGGGHAMAAGLTVEREKLGRLRSFFEERAQRTVPDL
VAMETLKIDGALSASGATLALAGQLEQAGPYGSGHPQPIFALPAHRVRDVRPVGVNHLRV
GLEGPDGGRLDAMAFRAAEADLGLFLMKERGQAVHLAGTLSADSWQGNQRIQFRIIDAAK
AF
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgagcatgttggaaaacgcagatcccgtcagccgggcctttctcggcgtcgagcgctcg
gcgaccgggcagcgctgggtggcgcggctcgaccaggcgggggagaaccgcgcgctggcg
atgagccagacccacggcctgccggacctcatctcgcgcgtgctttcgggccgcggcgtc
gccttcgagaacgcgctggaattcctcgatccaacgctgcgccggttgatgccggaaccc
tacagcctgatggattgcgaagcggcgacggaacggctggcatgcgccatcgagcggcgc
gagcgggtggcgatcttcggcgattacgatgtcgacggggcgtcatcctcggccttgctc
tatcgtttcctcacgcatttcgacgtgccggcggaaatctatattcccgatcgtattttc
gagggctacggcccgaaccccaatgccatcggccagctcatcgaccggggcgcgcaactg
atcgtgacggtcgactgcggctcgacgagccacgaatcgcttgccgtggccagggagcgg
ggcatcgatgccgtcgtcatcgatcatcatcaggtgggcgaagagttgccgccggccgca
gcgctcgtcaacccgaatcgcgaggacgatctttcggggcaggggcacctgtccgccgcc
ggcgtcgtcttcctcgtgctggtggcgttgcagcggcttctgcgccagcgcggcgacaag
cgggccgaaagcttcgatctcctctccatgctcgatctggtggcgctgtccacggtctgt
gacgtcgttccgctgaaggggctgaaccgggcctatgtggtcaagggcctcgtcgccgcg
cgccatctcggcaatgcgggcctgacggcgctgttgaagcaggcgggcatcggcgggccg
gtgacgccctatcatctcggcttccttgtcggcccgcgcatcaatgccggcgggcgtatc
ggcgatgccgccctcggcagccgcctgctgaccatcgacgaagcgggtgaagccgaacgc
atcgcgaaacagctcgacgagctgaaccgcgagcggcaggccatggaagccgccatgctg
gcggaggccgaggcggaagcgcaggcggaatatggcacaggcgaaaacgcctcggtgatc
ctgacggcccgcgagggctggcatccgggcgtcgtcggcctgctcgcctcgcggctgaag
gaccgtttccgccgcccggccttcgccatcgccttcgacccttccggcaagggcaccggc
tccggccgctcgatcagcggcttcgatctcgggcgcatggtccgcgcggctgtagatgag
gggattctcgtcaagggcggcggccatgccatggcggcgggcttgacggtggagcgggaa
aaactcggccgtctgcgcagcttcttcgaggagcgcgcgcagcgcaccgttccggacctg
gtggcgatggaaaccctgaagatcgacggcgcgctcagcgcctcgggtgcgacgctggcg
cttgccggccagctcgaacaggccggtccctatggctcgggccatccgcagccgatcttc
gcgctgccggcgcaccgcgtccgcgatgtgcggcctgtcggcgtcaaccatctgcgtgtc
ggcctcgagggtccggacggcggacggctcgatgccatggccttccgcgcggcggaggct
gatctcgggcttttcctaatgaaggagcgtgggcaggcggtgcatctcgccggtacgctc
tctgccgatagctggcagggaaaccagcgtatccagttccgcatcatcgatgcggcgaaa
gcgttctga
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