Shinella zoogloeoides: K8M09_10245
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Entry
K8M09_10245 CDS
T07727
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
szo
Shinella zoogloeoides
Pathway
szo03420
Nucleotide excision repair
szo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K8M09_10245
03430 Mismatch repair
K8M09_10245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
szo03400
]
K8M09_10245
Enzymes [BR:
szo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8M09_10245
DNA repair and recombination proteins [BR:
szo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K8M09_10245
MMR (mismatch excision repair)
Other MMR factors
K8M09_10245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
Viral_helicase1
PcrA_UvrD_tudor
AAA_11
Motif
Other DBs
NCBI-ProteinID:
UEX83663
LinkDB
All DBs
Position
2040360..2042819
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AA seq
819 aa
AA seq
DB search
MTSGYDDIPFFDEDPQLGGKPAAPARPAGGGIAARAMAARDAQRAPDYLSGLNPEQREAV
ETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAFPSQLLAVTFTNKAAREMKERIGLLV
GGAVEGMPWLGTFHSIGVKLLRRHAELVGLKSDFSILDTDDVVRLIKQILQAEGIDDKRW
PAKQFAGMIDTWKNKGLDPAQIPEGDARAFANGKGRELYTAYQTRLKTLNACDFGDLLLH
PIRIFRAHADVLAEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRPKGTPQNVCCVGDDDQ
SIYGWRGAEVDNILRFEKDFPGAKVIKLERNYRSTAHILGAAGHLIAHNEDRLGKTLFTD
RHDPDDDKVVVHAAWDSEEEARAVGEEIEQLQRKQHKLNDMAILVRASFQMREFEDRFVT
LGLNYRVIGGPRFYERLEIRDALAYFRLVSQPADDLAFERIVNTPKRGLGDTTIRNLHDY
ARARDIPMLAAAADIVETDELKPKARKALFDVVTDFRRWQTLMETMPHTELAEQILDESG
YTAMWQADKSAEAPGRLENLKELIRSMEAFESLRGFLEHVSLVMDAEQNENLDAVSIMTL
HSAKGLEFETVFLPGWEEGLFPHQRSLDEGGRSGLEEERRLAYVGITRAKRRCHIWFVSN
RRIHGLWQSTLPSRFLDELPESHVEVAEVEQSYGGYGRGGYGQSRFDKQEPFQNAYSTPG
WRRAQANRTEATRDNWGSRSGHAVERIGYGESGPRARTIEGELIAKSTTSEPSKFSVGDR
VFHLKFGNGNVAAVEGNKLTIDFDRAGQKRVLDGFVERV
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgaccagcggttacgacgacattcccttcttcgacgaggacccgcagctcggcggcaag
cccgcagcgcccgccaggccggccggcggcggcatcgccgcgcgcgccatggcggcccgc
gacgcgcagcgtgcgcccgattatctttccggcctcaatcccgagcagcgcgaggcggtc
gagacgctggacggccccgtgctggtgctcgccggcgcgggcaccggcaagacgcgcgtg
ctcaccacccgcatcgcccatatcctcgccaccggccgcgccttccccagccagcttctc
gccgtgaccttcaccaacaaggcggcgcgcgagatgaaggagcgcatcggcctgctcgtc
ggcggcgcggtcgagggcatgccctggctcggcacattccattccatcggcgtaaaactc
ctgcgccgccatgccgaactcgtcggcctcaagtcggatttctcgatcctcgacaccgac
gacgtggtgcggctgatcaagcagatcctgcaggccgagggcatcgacgacaagcgctgg
ccggccaagcagttcgccggcatgatcgacacgtggaagaacaagggcctcgacccggcg
cagatcccggaaggtgacgcccgcgccttcgccaacggcaagggccgcgaactctacacc
gcctaccagacccgcctgaagacgctgaacgcctgcgatttcggcgacctgctgctgcac
ccgatccgcatcttccgcgcccatgcggatgtgctggccgagtaccaccagaaattccgt
tacatcctcgtcgacgagtatcaggacaccaacaccgcccaatatatgtggctgcgcctg
ctcgcccagcgccccaagggcacgccgcagaacgtgtgctgcgtcggtgacgacgaccag
tcgatctacggctggcgcggtgcggaggtagacaacatcctgcgcttcgaaaaggatttt
ccgggcgccaaggtcatcaagctggagcgcaactatcgctccacggcccatatcctcggc
gcggccggccatctgatcgcccataacgaggaccggctgggcaagacgctcttcaccgac
cggcacgatcccgacgacgacaaggtcgtcgtccacgccgcctgggactccgaggaggag
gcccgcgcggtcggcgaggagatcgagcagctccagcgcaaacagcacaagctgaacgat
atggcgatcctcgtgcgcgcctcgttccagatgcgcgagttcgaagaccgcttcgtcacg
ctcggcctcaactaccgcgtcatcggcggcccgcgcttctatgagcggctcgaaatccgc
gatgccctcgcctatttccgcctcgtcagccagccggccgacgatcttgccttcgagcgc
atcgtcaatacgcccaagcgcggcctcggcgacacgacgatccgcaacctgcacgactat
gcccgcgcccgcgacattccgatgctcgccgcagcggccgatatcgtcgaaacggacgag
ctgaagccgaaggcgcgcaaggcgctcttcgacgtcgtcaccgatttccgccgctggcag
acgctcatggagacgatgccgcacaccgagcttgccgagcagattctcgacgagagcggc
tatacagccatgtggcaggccgacaagtcggccgaagcgccgggacgccttgagaacctc
aaggaactgatccgctccatggaagcgttcgaatccctgcgcggcttcctcgagcatgtc
tcgctggtcatggacgccgagcagaacgagaatctcgatgccgtctcgatcatgacgctg
cactcggccaagggcctggaattcgagaccgtcttcctgcccggctgggaagaaggcctc
ttcccgcatcagcgctcgctggacgagggcggccgctccgggctggaggaagaacggcgc
ctcgcctatgtcggcatcacacgcgcaaaacgccgctgccatatctggttcgtctcgaac
cgccgcatccacggcctctggcaatccaccctgccctcccgcttcctcgacgagctgccg
gaaagccatgtggaagtggccgaggtggaacagtcctatggcggttacggccgcggcggc
tacggccagtcgcgcttcgacaagcaggagccgttccagaacgcctattcgacgccgggc
tggcggcgtgcgcaggcgaaccgcaccgaggcgacgcgcgacaattggggttcacgctcc
ggccatgccgtcgagcgcatcggctacggggaaagcggcccgcgcgcccgcaccatcgaa
ggggaactcatcgccaagtcgaccacgagcgagccatcgaaattttccgtcggcgaccgg
gtcttccatctgaaattcggcaatggcaacgtggcggcggtcgagggcaacaagctgacg
atcgacttcgatcgcgccggccagaagcgcgtgctcgacggcttcgtcgagcgggtgtga
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