Shinella zoogloeoides: K8M09_10405
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Entry
K8M09_10405 CDS
T07727
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
szo
Shinella zoogloeoides
Pathway
szo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8M09_10405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
szo03019
]
K8M09_10405
03009 Ribosome biogenesis [BR:
szo03009
]
K8M09_10405
Enzymes [BR:
szo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K8M09_10405
Messenger RNA biogenesis [BR:
szo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K8M09_10405
Ribosome biogenesis [BR:
szo03009
]
Prokaryotic type
rRNA helicases
K8M09_10405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
UEX80043
LinkDB
All DBs
Position
2074922..2076997
Genome browser
AA seq
691 aa
AA seq
DB search
MTSFESLAPAMAKALEKRGYTTLTPVQIAVSDPKIGDADALVSAQTGSGKTVAFGLALAP
TLLEGEDRFDRAGSPLALVIAPTRELAMQVKRELEWLYEMTGAVIGSCVGGMDVRTERRA
LERGAHIIVGTPGRLRDHITRGNLDLSDIRAVVLDEADEMLDLGFREDLEFILEAAPEDR
RTLMFSATVPKEIAALAKNYQRDAMRISTAAEKEQHVDIDYRALLTAPADRENAIINTLR
FYDAQNAIVFCSTRAAVNHLTARFNNRGFSVVALSGELSQNERTHALQAMRDGRARVCIA
TDVAARGIDLPNLELVVHADLPTNPDTLLHRSGRTGRAGRKGVSALIVPLNARRKAERLL
QIANLKANWATPPSAEEILRRDDERLLADPLLTDKVTEDEEATVEALVAKFDARQLAAAV
TRFFKAGRSAPEDLIEVSLEQRKPRERSNDAIPAETKRPRDSFAASVWVSISVGRKQRAE
PRWLIPMLCRNGNITKNEIGAIKMQPEETFVELSAEASDGFLGALGPNSMLERGIRVTVL
EGMHDLTPQFYERTPGEKTPRYDRPERRADWKPKGEFEKKGGYDKKARFEKKRDFDKPEG
ASAKPHWKDRDNKGDFNKGDADKKPRFEKKRDFDKPEGASAKPHWKDREDGGKKPAKPFA
GAKPFKGKRDEKFAKPEGAARKPKGKKPERD
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atgacgagtttcgaaagcctcgctccggcgatggcaaaggcgttggaaaaacgcggctat
accacattgacgccggtgcagatcgccgtctccgaccccaagatcggcgatgccgacgcg
ctggtctccgcgcagaccggctccggcaagaccgtggccttcggcctcgcgctcgccccg
acgctgctggaaggcgaagaccgcttcgaccgcgccggcagcccgctcgccctcgttatc
gccccgacgcgcgaacttgccatgcaggtcaagcgcgagctggaatggctctacgagatg
accggcgcggtcatcggctcctgcgtcggcggcatggatgtgcgcacggaacggcgcgcg
ctggaacgcggcgcgcatatcatcgtcggcacgcccggccgtctgcgcgaccacatcacc
cggggcaatctcgatctttccgacatccgcgccgtcgtgctcgacgaggccgacgagatg
ctggacctcggcttccgcgaagacctggaattcatcctggaagccgcgcccgaagaccgc
cgcacgctgatgttctcggccaccgtgccgaaggaaatcgccgccctcgccaagaattac
cagcgcgatgccatgcgcatctcgacggccgcagagaaggaacagcacgtcgatatcgac
tatcgcgccttgctgaccgccccggccgaccgcgagaacgccatcatcaacacgctgcga
ttctacgatgcgcagaacgccatcgtcttctgttcgacgcgcgcggccgtgaaccacctg
acggcccgcttcaacaatcgcggcttctcggtcgtcgccctttccggcgaactcagccag
aacgaacgcacccatgcgctgcaggccatgcgcgacggccgtgctcgcgtctgcatcgcc
accgacgtcgccgcccgcggcatcgacctgccgaacctcgagctggtcgttcatgccgat
ctgccgaccaatcccgacacgctgctgcaccgttcgggccgcaccggccgcgccggccgc
aagggcgtcagcgccctcatcgtgccgctcaacgcccgccgcaaggccgagcgcctcttg
cagatcgcgaacctcaaggccaactgggcgaccccgccctcagccgaggaaatcctgcgc
cgcgacgacgagcgcctgctcgccgacccgctgctgaccgacaaggtcaccgaggacgag
gaagcgaccgtcgaggcgctggtcgcaaagttcgacgcccgccagctcgccgcagccgtc
acgcgcttcttcaaggccggccgctccgcgccggaagacctgatcgaagtctcgctcgaa
cagcgcaagccgcgcgagcgcagcaacgacgccattccggccgaaaccaagcgcccgcgc
gacagcttcgccgcaagcgtctgggtctccatctcggtcggccgcaagcagcgcgccgaa
ccgcgctggctgatccccatgctctgccgcaacggcaacatcaccaagaacgagatcggc
gcgatcaagatgcagccggaagagacgtttgtggagctctccgccgaggcatcggacggt
ttcctcggcgcgctcgggccgaacagcatgctggaacgcggcatccgcgtgaccgtgctg
gaaggcatgcacgacctcacgccccagttctacgagcgcacgcccggcgagaagacgccg
cgctacgaccgtccggaacgccgcgccgactggaagccgaagggcgaattcgagaagaag
ggcggctatgacaagaaggcgcgcttcgagaagaagcgtgacttcgacaagccggaaggc
gcaagcgccaagccgcactggaaggaccgcgacaacaagggcgatttcaacaagggcgac
gccgacaagaagccccgtttcgaaaagaagcgcgatttcgacaagccggaaggtgcgagc
gccaagccgcactggaaggatcgcgaagacggcggcaagaagcccgccaagccctttgcc
ggcgcaaaacccttcaagggcaagcgcgacgagaaattcgccaagcccgaaggcgcggcc
cgcaagcccaagggcaagaagccggaacgcgactga
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