Shinella zoogloeoides: K8M09_12020
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Entry
K8M09_12020 CDS
T07727
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
szo
Shinella zoogloeoides
Pathway
szo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K8M09_12020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
szo03019
]
K8M09_12020
Enzymes [BR:
szo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K8M09_12020
Messenger RNA biogenesis [BR:
szo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K8M09_12020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NAT10_TcmA_helicase
AAA_22
Utp25_C
ADI
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
UEX80347
LinkDB
All DBs
Position
2410107..2411540
Genome browser
AA seq
477 aa
AA seq
DB search
MTTFHDLGLSKTIVATLSALGFEKATPIQEKAIPLVLEGSDLIGLAQTGTGKTAAFGLPM
IEKLLADTRRPDPRNIRALILAPTRELVNQIADNLRDFVKKTPLRVVTVVGGASINKQSE
MLNRGTDILVATPGRLLDLVARKSVTLTQARYLVLDEADQMLDLGFIHDLRKISKMVPKN
RQTLLFSATMPKLIAELAGEYLSNPKKVEVTPPGKAADKVEQYVHHVPGKDQKTQILKQT
LTANPDGLSLVFSRTKHGAEKLMKHLDQVGFKAASIHGNKSQGQRERALKAFRDGEIRVL
VATDVAARGIDIPGVTHVYNYDLPEVPDAYVHRIGRTARNGRDGIAIAFCAPDEAHLLRD
IERLMGIKIAVASGEAPAEVSTAGPGGKSRKGRNSRGGGQRSGNGRAANRPARQPFGDGA
QAEAGAPSGAKRPQHGRPAQKQGDRQNRNHGGGNGQPGRPQRSGKPRRPEGQRREQA
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
ttgaccactttccacgacctcggcctctcgaagaccatcgtcgccaccctttccgcgctc
ggctttgaaaaagcgaccccgatccaggaaaaggccatcccgctcgtcctcgaaggctcg
gacctcatcggccttgcccagaccggcaccggcaagacggccgccttcggcctgccgatg
atcgaaaagcttctcgccgacacccgccgtcccgacccgcgcaacatccgcgccctcatt
ctcgccccgacccgcgaactggtgaaccagatcgccgacaacctgcgcgatttcgtgaag
aagacgccgctgcgcgtcgtcaccgtcgtcggcggtgcttcgatcaacaagcagtcggaa
atgctgaaccgcggcaccgacatcctcgtcgccaccccgggccgcctgctcgatctcgtc
gcccgcaagtcggtgacgctgacgcaggcccgctacctcgtgctcgacgaagccgaccag
atgctcgatctcggcttcatccacgacctgcgcaagatctccaaaatggtgccgaagaac
cgccagacgctgctcttctcggccaccatgccgaagctgatcgccgagcttgccggcgaa
tatctcagcaatccgaagaaggtcgaagtcaccccgcccggcaaggccgccgacaaggtg
gagcagtatgtccaccacgttcccggcaaggaccagaagacgcagatcctcaagcagaca
ctcaccgccaacccggatggcctgtcgctcgtcttctcgcgcaccaagcatggcgccgag
aagctgatgaagcatctcgaccaggtcggcttcaaggccgcctcgatccacggcaacaag
agccagggccagcgcgagcgcgccctcaaggccttccgtgacggtgagatccgtgtactc
gtcgccaccgacgtcgccgcccgcggcatcgacatcccgggcgtcacccacgtctacaac
tacgacctgccggaagtgccggacgcctatgtccaccgcatcggccgcacggcccgcaac
ggccgcgacggcattgccatcgctttctgcgcgccggacgaagcgcacctcctgcgcgac
atcgagcgcctgatgggcatcaagatcgcagtcgccagcggtgaagccccggccgaagtc
agcacggccggccccggcggcaagtcccgcaagggccgcaacagccgtggcggcggccag
cgctccggcaacggccgcgccgccaaccgtccggcccgccagcccttcggcgacggcgca
caggccgaagccggcgcgccgtccggcgccaagcgcccgcagcacggccgtccggcccag
aagcagggcgaccgccagaaccgcaaccacggcggcggcaacggccagcccggccgcccg
cagcgcagcggcaaaccgcgccgcccggaaggccagcgccgcgaacaggcgtaa
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