Shinella zoogloeoides: K8M09_16980
Help
Entry
K8M09_16980 CDS
T07727
Name
(GenBank) DEAD/DEAH box helicase
KO
K19789
DNA repair protein RadD
Organism
szo
Shinella zoogloeoides
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
szo03400
]
K8M09_16980
DNA repair and recombination proteins [BR:
szo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factor
K8M09_16980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ResIII
Helicase_C
DEAD
UPF0547
SWI2_SNF2
AAA_30
Lipase_GDSL_2
DZR
AAA_22
DZR_2
Zn_Ribbon_1
Cas3-like_C_2
ATP-grasp_5
zf-Tbcl_FmdE
SLFN-g3_helicase
Zn-C2H2_12
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
UEX81249
LinkDB
All DBs
Position
complement(3453863..3455551)
Genome browser
AA seq
562 aa
AA seq
DB search
MRLRPRQKTFVERSVAALASRGNTLGVAPTGAGKTIMLSAVTGEMIGDGAKACVLAHRDE
LTAQNRAKFQRVVPGVATSVIDATEKSWGGQVAFAMVPTLARASNLADMPRLDLLVVDEA
HHAVADSYRRIIDRVREANPDARIFGVTATPNRGDRKGLREVFDNVADQVRLGELIASGH
LVPPRTFVIDVGVQDELRSVRKTMSDFDMAEVAGIMDRAPVTDEVIRHWKEKAGDRQTVV
FCSTVAHAEHVTEAFRAAGVSAALIHGDLAAETRKAILADYATGDIRVVVNVAVLTEGWD
HPPTSCVVLLRPSSYKSTMIQMVGRGLRTVDPEEHPGVVKTDCVVLDFGTSSLIHGTLEQ
DVDLDGKTETGEAPTKTCPACEAEIPLAATECPLCGEAFPREDLDAGEGGDAAPLSGFMM
TEIDLLKRSSFAWVDLYGTDDALMATGFAAWGGIFWLGGVWYAIGGAKGERPHLLGVGER
TVCLAQADDWLNTHETDESAFKTRSWLRQPPTEKQLQYLPPECRHDFGLTRYRASALMTF
GFNKRAIRQLIDTAASPERRAA
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgcgcccccgccagaagaccttcgtcgagcgcagcgtggctgcgctcgcctcc
cgcggcaacacgctgggcgtggcgcccacgggtgctggcaagaccatcatgctctcggcg
gtcaccggcgagatgatcggcgacggcgccaaggcctgcgtgctggcccatcgcgacgaa
ctgaccgcgcagaaccgcgccaagttccagcgcgtggtgccaggcgtcgccacatcggtc
atcgacgccacggagaagtcctggggtggccaggtcgccttcgccatggtgccgacgctg
gcgcgggcctcgaacctcgcggacatgccgcgcctcgacctgctggtcgtggatgaggcg
caccatgcggtcgccgacagctatcgccgcatcatcgaccgggtgcgcgaggccaatccc
gacgcccggatcttcggggtcacggcgacgccgaaccgtggcgacaggaagggcctgcgc
gaggtcttcgacaatgtcgccgaccaggtccggctgggcgaactgatcgcctcgggccac
ctggtgccgccgcgcaccttcgtcatcgacgtgggtgtgcaggacgagctccgctcggtc
cgcaagacgatgtcggatttcgacatggcggaggtggcgggcatcatggaccgcgccccc
gtcaccgacgaggtgatccgccactggaaggagaaggcaggcgaccggcagaccgtggtg
ttctgctccaccgtcgcgcacgccgaacacgtcactgaggcgttcagggcagctggcgtt
tccgccgcgctgatccatggcgacctggcggccgagacccgcaaggcgatcctcgccgac
tacgccacgggggacatccgcgtcgtggtcaacgtggcggtgctgaccgagggctgggac
catccgcccacctcctgcgtcgtgctgctgcggcccagttcctacaagtccaccatgatc
cagatggtcgggcgcgggctgcgcaccgtcgatcccgaggaacaccccggcgtcgtcaag
accgactgcgtcgtgctggatttcggcacctcgagcctgatccacggcacgctggaacag
gatgtcgatctcgacggcaagaccgaaaccggcgaggcgccgacaaagacctgtcctgcc
tgcgaggcggagatcccgctggctgccacagaatgcccgctctgcggtgaggcgttcccc
cgcgaggatctggatgcgggcgaaggcggggacgccgcgccgctctcgggcttcatgatg
acggagatcgacctgctgaagcggtccagcttcgcgtgggtcgacctttacggcacggac
gacgcgctgatggccacgggcttcgcagcctggggcggcatcttctggctgggcggggtc
tggtacgccatcggcggggcgaagggcgagcgcccccacctgttgggtgtcggtgagcgc
accgtctgcctcgcgcaggccgacgactggctgaacactcatgagaccgacgagagcgcc
ttcaagacccggtcctggctgcgccagccgccgaccgagaagcagctgcaatacctgccg
cccgagtgccgccatgacttcggcctgacgcgctaccgcgcctccgcgctgatgaccttc
ggcttcaacaagcgcgccatccgccagctgatcgacacggcggcctcgcccgaacggagg
gcggcatga
DBGET
integrated database retrieval system
