KEGG   Shinella zoogloeoides: K8M09_17285
Entry
K8M09_17285       CDS       T07727                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
szo  Shinella zoogloeoides
Pathway
szo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:szo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    K8M09_17285 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:szo03021]
    K8M09_17285 (rho)
   03019 Messenger RNA biogenesis [BR:szo03019]
    K8M09_17285 (rho)
Transcription machinery [BR:szo03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     K8M09_17285 (rho)
Messenger RNA biogenesis [BR:szo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     K8M09_17285 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 AAA_25 S1CSD-TOTE-2 NACHT AAA DUF6360 Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: UEX81306
LinkDB
Position
complement(3517573..3518838)
AA seq 421 aa
MAEMKLQDLKNKTPTDLLAFAESLEVENASTMRKQELMFAILKMLASQDVEIIGEGVVEV
LQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVN
TINFDDPEKIRHKVHFDNLTPLYPNERFKLELDIPTSKDLSPRVLDLVAPLGKGQRALIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAT
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPA
MDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTTDAIEFLIDKLKQTKNNGDFFDSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atggccgaaatgaagctacaagacctcaagaacaagactccgaccgaccttcttgccttc
gccgaatcgctcgaggtcgagaacgcgagcacgatgcgcaaacaggaactgatgtttgcc
atcctcaagatgctggcctcgcaggatgtcgagatcatcggcgagggcgtcgtggaagtg
ctgcaggacggtttcggcttcctgcgctcggccaatgcgaactacctgcccggcccggac
gatatatacatctcgccttcgcagattcgccgtttctcgctgaagaccggcgatacggtc
gaaggcccgatccgcggcccgaaggaaggcgagcgctacttcgctcttctcaaggtcaat
acgatcaatttcgacgacccggaaaaaatccgccacaaggtccatttcgacaacctgacg
ccgctctacccgaacgagcgcttcaagctggaactggatatcccgacctccaaggatctt
tcgccgcgtgttctcgatctggtggcgccgctcggcaagggccagcgcgcgctgatcgtc
gcaccgccgcgcacgggtaagacggttctgttgcagaacatcgcccattcgatcacggcg
aaccacccggaatgttatctcatcgttctcctgatcgacgagcgtccggaagaagtgacg
gacatgcagcgttcggtgaagggcgaagtggtatcctccaccttcgacgagccggcgacg
cgccacgtgcaggtcgccgagatggtcatcgaaaaggccaagcgtctcgtcgagcacggc
cgggacgtcgtcatcctgctcgattcgatcacccgccttggccgcgcctacaacacggtc
gttccgtcctcgggcaaggtcctcaccggtggtgtcgacgccaacgccctgcagcgcccg
aagcgcttcttcggtgcggcgcgtaatatcgaggaaggcggttcgctgacgatcatcgcc
acggcgctcatcgataccggcagccgcatggacgaagtcatcttcgaagaattcaagggc
accggcaactcggaaatcgtgctggaccgcaaggttgccgacaagcgcatcttcccggcc
atggatatcctcaagtctggtacgcgcaaggaagacctcctcgtgccgcgccaggacctg
cagaagatcttcgttctccgccgtatccttgccccgatgggcacgaccgacgcgatcgag
ttcctgatcgacaagctgaagcagacgaagaacaacggcgatttcttcgactcgatgaac
acctga

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