Shinella zoogloeoides: K8M09_19125
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Entry
K8M09_19125 CDS
T07727
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
szo
Shinella zoogloeoides
Pathway
szo03420
Nucleotide excision repair
szo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
szo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K8M09_19125
03430 Mismatch repair
K8M09_19125
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
szo03400
]
K8M09_19125
Enzymes [BR:
szo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
K8M09_19125
DNA repair and recombination proteins [BR:
szo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K8M09_19125
MMR (mismatch excision repair)
Other MMR factors
K8M09_19125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C_2
UvrD_C
Viral_helicase1
AAA_30
AAA_22
AAA_11
ResIII
Motif
Other DBs
NCBI-ProteinID:
UEX81643
LinkDB
All DBs
Position
3889582..3891315
Genome browser
AA seq
577 aa
AA seq
DB search
MTISSYAPTQEQQNVIDHAGTAFVTACPGAGKTRTMVERARQLLNHPGDRRGVAFLSFTN
AAVDELEARLRAFGVLPAPLFPSFIGTFDRFLWQFLIAPFGIPNCDQLPKLVPDKSNWEV
KPPYDGAQALRLRCFDRATGKVIPILAKDEGFDVDKRQIAAHETSALSTIRRARSQGQID
FEDVRVCVRERLSDVAFAKRVGAALAARFREIIVDEAQDCNPADLEIVDWLRASGIRVKV
ICDPNQSIYEFRGGVTDELQRFAATFDATDRLPMSGNFRSSPAICAAIVTLRPPSSRSEP
DKPLGPHRVDTTPVHILSYSGSAVSPAIGSAFRDLVEGLTIPLHLAPVLASTRASASKAI
GQPTIEPTAHMTLLLAEAAMNYHFAFAVGNRRDALINLHRIVLLVQGRIGALGGYHSYLL
SEGLEDGRWRPEIIALANGLRFDQADTVDQWLARARSLLVPGLVVNSTINQRLRGHADLT
TALARAPTNSSPARTIHSVKGQEFPGVCVVMTTKTAGAIIDLLEGQTSTGADEEARKIYV
GASRAERLLAIAVPKSRAARLQTLLVNGGCEVSLHQI
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
gtgaccatctcctcgtatgctccgacccaagagcagcagaacgtcatcgatcacgctggc
acggcgtttgtaaccgcctgccctggcgcgggtaagaccaggacgatggtcgagcgcgcc
cgtcagttgctaaatcatccaggcgaccgacgcggtgtcgcgttcctgtcgttcacaaac
gccgcggtcgacgaactggaggcacgcctccgcgccttcggcgtgctcccggcgccgttg
tttccgagtttcataggaacgttcgatcgatttctctggcagtttttgatcgcaccattc
ggcattcccaattgcgatcaattgccgaagcttgtccccgacaagagcaattgggaggtg
aagcctccctacgacggcgctcaggcgctccggttgcgttgctttgatcgcgcgacgggc
aaggtaattcccattctcgcgaaggacgagggtttcgacgtcgacaagcgccagatcgca
gcgcatgagaccagcgcactctcaacgatcagacgtgcgcgaagccagggccaaattgac
ttcgaagatgtccgtgtctgcgtccgtgaaagactgtccgacgtggccttcgcgaagcgc
gtcggtgccgcgctcgctgcccgatttcgggagatcattgtcgacgaagcgcaggactgt
aaccctgccgatcttgagattgttgattggctgcgggcatctgggatcagagtgaaggtc
atctgcgaccccaaccagtctatctacgaattccggggcggcgtgaccgacgaacttcaa
cggttcgccgcgacgttcgacgcaacggatcgtttgccaatgagcggcaatttcagatcc
agcccggcaatctgtgcggcgatcgtgacgctgcgaccgccgtcatcgcgctccgagcca
gacaaaccgttaggcccgcatcgagtcgatacaacgccggtacatatcctgtcgtacagc
ggaagcgcggtctctccggctatcggctcagccttccgggacctcgttgaggggctgacc
atccccctacacctcgcgccagttctagcatccacgcgggccagtgcttcaaaagccatc
ggtcagccgacgattgagccgaccgcccacatgacgctccttttggcggaagcggccatg
aactatcatttcgcgttcgctgtaggaaatcgtcgtgacgcactcatcaacctgcaccgc
atcgtcctgctggttcagggccgcatcggtgcgttgggaggctatcacagctaccttttg
agcgaagggcttgaggacggccgctggcgtccagagatcatcgcactcgccaatggcctt
cgcttcgaccaggccgatacagttgatcaatggctggccagagcgcgcagccttctcgtc
cctggcctcgtcgtaaactctaccatcaaccagcgcctcagagggcacgcagacctgacg
acggcgcttgctcgcgcgccgacaaattcttcgccggcccgcacgattcactccgtaaag
gggcaggaatttcccggagtgtgcgtagttatgacgacgaagaccgctggcgcgatcatc
gacctcctcgaaggccaaacctcaacgggcgctgacgaagaggcccgcaagatctacgtc
ggagcctcgcgggcggaacgcctgctcgctatcgccgtcccgaagagccgggccgcgcgg
ctccaaacccttctcgtcaatggaggttgcgaggtcagccttcaccaaatctga
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