Candidatus Nitrosocosmicus oleophilus: NMY3_00393
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Entry
NMY3_00393 CDS
T04185
Symbol
cshA
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
taa
Candidatus Nitrosocosmicus oleophilus
Pathway
taa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMY3_00393 (cshA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taa03019
]
NMY3_00393 (cshA)
03009 Ribosome biogenesis [BR:
taa03009
]
NMY3_00393 (cshA)
Enzymes [BR:
taa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NMY3_00393 (cshA)
Messenger RNA biogenesis [BR:
taa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NMY3_00393 (cshA)
Ribosome biogenesis [BR:
taa03009
]
Prokaryotic type
rRNA helicases
NMY3_00393 (cshA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
ALI34606
UniProt:
A0A654LVY4
LinkDB
All DBs
Position
343983..345350
Genome browser
AA seq
455 aa
AA seq
DB search
MVSFEELGIEKSIVKALKETGIEQPFPIQESIIPLILKGEDVIGRSNTGTGKTAAFVLPM
LSKLNPKNFLQGLILVPTRELAIQITSTINQLVKYSNLRSVAIYGGQNFQMQRKILNKGV
NIVVATPGRLLDHMNQGTITLSKINFLVLDEADRMLDMGFIDDIKEILSYIDSKKQICLF
SATMPDSIMQLAKEQMHNPKQISIEKTISQANINQSYLMLYEKDKFQQLVSTLKPISNND
ESHIIVFTATKQRARDLTYKLRNDDFYVDSIHGDLNQRQRESTLSRFRNKKFNILIATDV
ASRGLDITTVSHIINYDIPDDVETYFHRIGRTARAGANGTALSFVSQHDMFTLRKIQNIA
ANSLKNLNTEYGIEVDFKFNSAPRPNRFRSNYGRRGYSQSRVPGEQRSRNNYDNSSSRYP
SRNNYDNSSSRYPSRRLSGITRPLGRRNNYNRDSD
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
ttggttagttttgaagaacttggtattgaaaaatctatagttaaagcattgaaagaaaca
ggaatcgaacaaccatttcctattcaagaatcaataattccacttattttaaaaggagaa
gatgttattggtagatcgaatacaggaactggtaaaacagccgcattcgtactacctatg
ttgagtaagttaaatccgaaaaattttctacaaggactaattttagttcctaccagagaa
ttggctatacaaattacaagcactataaatcaacttgtaaaatatagcaacctgaggtcc
gttgcaatctatggcgggcagaatttccaaatgcagaggaaaatactcaataaaggtgta
aatatcgtagttgcaaccccaggaagactcttggatcacatgaatcaaggaactattacg
ttaagcaagattaatttccttgtccttgatgaagcagatagaatgttagatatgggtttt
attgatgatatcaaagaaatcctttcttatatcgatagtaaaaagcaaatttgccttttc
tctgcaacgatgccggactccattatgcaacttgccaaagaacaaatgcataatccgaaa
caaattagcattgaaaagacaatttcacaggcaaacataaatcaatcatacttgatgctt
tacgaaaaggacaaatttcaacaattagttagcactttgaaacctatttcaaacaatgac
gaaagtcatattattgtatttacggcaacaaagcaaagggctagagatctgacgtataaa
ttaagaaatgacgacttttatgtagatagtattcatggagatttaaatcagagacaaagg
gaaagcaccctttcaagatttagaaataagaaattcaacattcttatcgctacagacgtc
gcatccagaggattagatattactactgtcagtcatattatcaactatgatatacctgat
gatgtagagacatatttccatagaatagggagaacagcaagagcaggagcaaatggtacc
gcactttcctttgtttcacaacacgacatgtttaccctcagaaaaatacaaaatattgca
gcaaactcgctaaagaatttaaacacagaatatggaatagaagtagatttcaaattcaat
agtgctcctagacctaatcgctttagatcaaattatggcagaagaggatatagtcaaagc
agggttccaggagaacaaaggtcaaggaataactatgacaatagtagcagcaggtatcca
tctaggaataactatgacaatagtagcagcaggtatccatctagaagactaagtggtatt
actagaccacttggtagaaggaataactataatagagattcagactaa
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