Candidatus Nitrosocosmicus oleophilus: NMY3_00742
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Entry
NMY3_00742 CDS
T04185
Symbol
rph_1
Name
(GenBank) Ribonuclease PH
KO
K11600
exosome complex component RRP41
Organism
taa
Candidatus Nitrosocosmicus oleophilus
Pathway
taa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
taa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NMY3_00742 (rph_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
taa03019
]
NMY3_00742 (rph_1)
Messenger RNA biogenesis [BR:
taa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NMY3_00742 (rph_1)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
NMY3_00742 (rph_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
UPA_SH3BP4
Motif
Other DBs
NCBI-ProteinID:
ALI34951
UniProt:
A0A654LXI4
LinkDB
All DBs
Position
675964..676710
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AA seq
248 aa
AA seq
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MYNLKELALMDENGKRSDGRGIDELRSIKITVGVVKNADGSAYIEFGKNKIIVAVYGPRE
VHPKHMALPDRCVLRCRYHMSPFSTDTRKNPAPSRREVEISKVMRESLEPSLILSDYPRA
VIDVFVEVLQADGGSRCAGINAASVALADAGINMRDLVSACAAGRLSDNIVLDINDLEDK
EGDADMPVAYLPNLEQVTLLQLDGKLTTTQFSECLEKAISGCKSVYEIQKEALMKKYFGN
EMELKEEA
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
gtgtataatttgaaagaattagctttaatggacgaaaacggaaaaagatccgatggccga
gggatagatgaattacggtcaattaaaattaccgtgggcgtggtgaaaaatgcagacggt
tcagcttatatagaatttggaaagaataaaataattgtcgctgtttacgggccacgtgaa
gttcatccaaaacatatggctcttccagacaggtgtgttcttaggtgtagataccacatg
tctccattttctacggatacacgaaagaaccctgctccctctcgacgagaagtggagata
tctaaagtaatgcgtgaatctttggaaccatcattaattttaagtgactatccgcgagca
gtaattgatgttttcgttgaagtattgcaagccgatggtggctctaggtgtgctggcatc
aatgcagcttctgtggcattagctgatgctggaattaatatgcgtgatttggtttctgct
tgtgctgctggacggttatcagacaatattgtactagatattaatgatcttgaggataaa
gaaggagatgcagatatgcctgtagcttatttgcccaatttggaacaagtaactttgctg
cagttggatggtaagttaactaccactcaatttagtgaatgtttggaaaaagcaataagt
ggatgcaagtcagtgtacgaaatacaaaaagaagcgctaatgaaaaagtattttggcaat
gaaatggagttgaaagaagaagcatga
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