Candidatus Nitrosocosmicus oleophilus: NMY3_00808
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Entry
NMY3_00808 CDS
T04185
Symbol
rtcB
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
taa
Candidatus Nitrosocosmicus oleophilus
Brite
KEGG Orthology (KO) [BR:
taa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
taa03016
]
NMY3_00808 (rtcB)
Enzymes [BR:
taa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NMY3_00808 (rtcB)
Transfer RNA biogenesis [BR:
taa03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NMY3_00808 (rtcB)
Prokaryotic type
tRNA splicing ligases
NMY3_00808 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ALI35017
UniProt:
A0A654LVK7
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All DBs
Position
746904..748382
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AA seq
492 aa
AA seq
DB search
MSGSLVTKNGKHMVNKISDYQFQISKEDSRGMNVPVTIFANDLLISKMALDRTLDQAVNV
TTLPGVKKHVVVLPDGHEGYGFPVGGVAASDLEEGIISPGGVGYDINCGVRLIRTNLVES
DVHSKLKILVDSLFSSIPTGVGSEGAIKLTSSELDDLLIDGAKWSVENGYGIETDLESCE
ERGRMKGADPINISTNARKRGSMQLGSLGSGNHFLEIQKVDKIYDEEAANTMGIRKEGEI
QILIHCGSRGFGHQVCSDYLRLSEQAMKRYNINVVDRELACVPNTSVEGESYRKSMFSAL
NFAWANRQMLTHWTRKTFQRVLQLSEQDLGMELVYDVSHNIAKVERHRVDGEGSRDLVVH
RKGATRAFPSGMEQLPDKFRSVGQPVIIPGSMGTASWVLLGSPKSMDLSFGSTAHGAGRT
MSRSEAKRKHTLDDVKKKLESRGIYVKSLTKNGLIEESPDAYKDVDMVADVSHKVGIATK
VVRLVPLGVIKG
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtctggttcattagtaacaaaaaatgggaagcatatggttaataaaatttctgactat
caatttcagatatctaaagaagattcgcgcgggatgaatgttcctgtaacaatatttgcg
aatgatctattgatatctaaaatggccctcgatcgaacactcgatcaagcggttaatgtc
acaaccctgcctggggtaaaaaaacatgtagttgtacttcctgatggtcatgagggatat
ggatttcctgtgggtggtgtggctgcttcagatttagaagaaggtatcattagtcctggt
ggagtgggttatgatattaattgtggagtcagactgattagaactaatcttgtagaatct
gatgttcattcgaaactcaaaattctagttgattctctattttcctctatacccacaggt
gtgggaagtgaaggggccattaagctgaccagctctgagctggacgatctactcattgat
ggcgcgaaatggtctgtagagaatggttatggaatagaaaccgatcttgaatcttgtgaa
gagcgtggaagaatgaaaggagcggatcctataaatatttcaactaacgccagaaaacgc
ggttcgatgcaacttgggagtttgggctcgggaaatcattttcttgagatccaaaaagtg
gacaagatatatgatgaagaagcagccaatacaatgggaattagaaaagaaggggaaata
caaattttaatacattgtggttcccgtggatttggacatcaagtttgtagtgactaccta
cggttgtcagaacaagccatgaaaagatataatataaatgttgtagatagagaattggca
tgtgttcctaatacgtcagtggaaggagaaagttatagaaaatccatgttttctgcacta
aattttgcttgggcgaataggcaaatgcttactcactggacgaggaagacatttcaacga
gttcttcaactaagcgaacaagatctcggcatggaattagtatacgatgtatctcataat
attgcaaaggtagaacgtcatcgagttgatggggaaggctctcgtgatttagtagtacat
aggaaaggcgcaacacgtgcttttccttctggaatggaacaactacccgataagtttcga
tccgtaggacaacccgtaattattccagggtccatgggtactgcaagttgggttctcttg
ggctcacctaaatcaatggatcttagttttggatcaactgctcatggtgcaggaagaact
atgtcgagatcagaagcaaaaagaaagcatacgttagatgatgtaaagaaaaagttagaa
tcacggggcatatatgttaaatctttaaccaaaaatggattgatagaagaatctcccgat
gcgtataaggatgtcgatatggttgccgatgtatcacataaggtggggattgccacaaaa
gttgttagattggtcccattaggagttattaaaggttaa
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